1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAAGTTGTGCCGTTTTGCCAGTAAGAAATCAAAGAGCATTCACTGTCAGTGCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcatttctgctatgtgtatttcgttattttcttcaatgtttgcttggttttacttgtgatattgaatctaattctgctgtgacccacacttgtttcttctgaatttttttttctctttcccttttggttttacag
species | Glycine max |
transcript | GLYMA09G08830.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCGGGAAGTACCATAAATCGATATTCAAGAGG ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTGEST: gi|207761416|gb|GD733759.1|GD733759
genomic: CCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
EST: AAGTACCATAAATCGATATTCAAGAGG ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTGEST: gi|38193501|gb|CF922707.1|CF922707
genomic: AAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
EST: GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGG ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTGEST: gi|193339835|gb|FK303222.1|FK303222
genomic: GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
EST: CCGGGAAGTACCATAAATCGATATTCAAGAGG ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTGEST: gi|207794735|gb|GD764822.1|GD764822
genomic: CCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
EST: GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGG ATTTCAAATGTCTCAAEST: gi|193702686|gb|FK638726.1|FK638726
genomic: GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAA
EST: CCGGGAAGTACCATAAATCGATATTCAAGAGG ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTGEST: gi|207713196|gb|GD697180.1|GD697180
genomic: CCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
EST: CCGGGAAGTACCATAAATCGATATTCAAGAGG ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
genomic: CCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGTTGTGCCGTTTTGCCAGTAAGAAATCAAAGAGCATTCACTGTCAGTGCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcatttctgctatgtgtatttcgttattttcttcaatgtttgcttggttttacttgtgatattgaatctaattctgctgtgacccacacttgtttcttctgaatttttttttctctttcccttttggttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG