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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTTTGTCTTATGCCAACTGGAGGAGGCAAGTCGATGTGTTATCAGATCCCTGCATTGGCAAAAGCAGGCATTGTGCTTGTCGTTTGCCCTTTAATAGgtgaatcacattcttcttttataaattttgtaactttttctgagcttattgctgcttggtaattcacttagttttgtgtgctaggacacatgtgatttctgacttttgttcctctgacag

Basic information

species Glycine max
transcript GLYMA09G08180.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G08180.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G35740.1 (Arabidopsis thaliana), 5'ss of exon 2
TGTTTTTGTCTTATGCCAACTGGAGGAGGCAAGTCGATGTGTTATCAGATCCCTGCATTGGCAAAAGCAGGCATTGTGCTTGTCGTTTGCCCTTTAATAGgtgaatcacattcttcttttataaattttgtaactttttctgagcttattgctgcttggtaattcacttagttttgtgtgctaggacacatgtgatttctgacttttgttcctctgacag
|| |||||  | |||||||| |||||||| || ||||| ||||||||||| |||||||| || ||| | || || || ||||| || |  ||||| || ||| ||||   || || ||   | |  || || | |       | ||   |  || |||||   || || |      ||||||  |   |  ||| |||   |||| |             
TGCTTTTGCTTGATGCCAACGGGAGGAGGAAAATCGATTTGTTATCAGATACCTGCATTAGCTAAACCTGGAATCGTCCTTGTTGTGTCTCCTTTGATTGgtaaatc-tgttttttttccctga--ttcgttaatgga--gaatctctgttttgattggt--ctctctaa---cgatgtgctttgtttctcgtgtttttcaacttctcag----------

upper sequence: GLYMA09G08180.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G35740.2 (Arabidopsis thaliana), 5'ss of exon 2
TGTTTTTGTCTTATGCCAACTGGAGGAGGCAAGTCGATGTGTTATCAGATCCCTGCATTGGCAAAAGCAGGCATTGTGCTTGTCGTTTGCCCTTTAATAGgtgaatca--cattcttcttttataaattttgtaactttttctgagcttattg--ctgcttggtaattcacttagttttgtgtgctaggacacatgtgatttctgacttttgttcctctgacag----------------------------------------------------------------------------
|| |||||  | |||||||| |||||||| || ||||| ||||||||||| |||||||| || ||| | || || || ||||| || |  ||||| || ||| ||||     || |||  | ||   ||     |   | ||||   | ||||  ||   |    ||   ||| ||||   ||| |     || | | |  | |||   |   | |  || |                                                                              
TGCTTTTGCTTGATGCCAACGGGAGGAGGAAAATCGATTTGTTATCAGATACCTGCATTAGCTAAACCTGGAATCGTCCTTGTTGTGTCTCCTTTGATTGgtaaatctgttttttttccctgattcgttaatggagaatctctgttttgattggtctctctaacgatgtgctttgtttctcgtgtttttcaacttctcagctttgatggtaagtgcattgtccttttcttattgtgttcttctcttttaagcttttttttgttaatggtttttgaagaaacgttttttgtttctacttag

upper sequence: GLYMA09G08180.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0016g00850.t01 (Vitis vinifera), 5'ss of exon 2
TGTTTTTGTCTTATGCCAACTGGAGGAGGCAAGTCGATGTGTTATCAGATCCCTGCATTGGCAAAAGCAGGCATTGTGCTTGTCGTTTGCCCTTTAATAGgtgaatcacattcttcttttataaattttgtaactttttctgagcttattgctgcttggtaattcacttagttttgtgtgctaggacaca--tgtgatttctgacttttgttcctctgacag---------
||||||||||| |||||||| |||||||| ||||| |||||||||||||| |||||| |||||||| |||| |||||||| || ||||| ||||||||||||||||   |||  | || | ||| |||   | |||      ||||||  ||  | |   | ||   || ||||    ||| ||||||||  | | ||| ||    || ||||  |               
TGTTTTTGTCTCATGCCAACAGGAGGAGGAAAGTCAATGTGTTATCAGATTCCTGCACTGGCAAAACCAGGGATTGTGCTCGTGGTTTGTCCTTTAATAGgtgaatggtatttatgttatgtaattttgacatcttagaggaagcttaa-gccacctaagattt---ttcgtttcaaatgcaaggacacagctctaattgcttttgttggttctccattttttgctcacag