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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCATGCAGGACTGTTCAATCTCTGCATAGTAGTGCTTGTTGCCGTGAACAGCAGACTTATCATTGAGAATTTAATGAAGgtttgcccctcttccctctatttttcatgtctatcctgcaaaatttggatttccaacttgtatgcatgcatttatctgtgtgcagctgttttaacttttttgtcatcggtgtgcatttatgttttgcag

Basic information

species Glycine max
transcript GLYMA09G07520.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G07520.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os06g36800.1 (Oryza sativa), 5'ss of exon 2
AGTCATGCAGGACTGTTCAATCTCTGCATAGTAGTGCTTGTTGCCGTGAACAGCAGACTTATCATTGAGAATTTAATGAAGgtttgcccctcttccctctatttttcatgtctatcctgcaaaatttggatttccaacttgtatgcatgcatttatctgtgtgcag-ctgttttaacttttttgtcatcggtgtgcatt-tatgt-tttgcag------
|| |||||||| ||  | || || ||||| || ||||| ||||| ||||||||||||||||| |||||||||||||||||||||        || | |    | || || |    |  | |  | | | |||| |   || ||||| |   |  |  ||  |   | || || ||  | |  | | |    |   |||| | ||| ||||| |      
AGCCATGCAGGCCTTCTGAACCTATGCATTGTTGTGCTGGTTGCTGTGAACAGCAGACTTATTATTGAGAATTTAATGAAGgttcattatcatttcttgctctctttattttccccagggagtagtagcatttacttattatatgcttttctcgacatgcctcttgtctattatagttctgatttaactcattctcattatctgtatttgccgctgcag

upper sequence: GLYMA09G07520.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g10810.1 (Oryza sativa), 5'ss of exon 2
AGTCATGCAGGACTGTTCAATCTCTGCATAGTAGTGCTTGTTGCCGTGAACAGCAGACTTATCATTGAGAATTTAATGAAGgtttgcccctcttccctctatttttcatgtctatcctgcaaaatttggatttccaacttgtatgcatgcatttatctgtgtgcagctgttttaacttttttgtcatcggtgtgcatttatgttttgcag
||||||||||| || ||||| || ||||| || || || ||||| ||||||||||| ||||| || ||||| ||||||||||||     |       |||  |   |   |  || |||   | |||   || |  |  |  ||| || | ||| | | ||    | | | || |  | ||  |  | |  |                  
AGTCATGCAGGCCTTTTCAACCTATGCATTGTTGTTCTAGTTGCAGTGAACAGCAGGCTTATTATCGAGAACTTAATGAAGgttcatagccgcctattcttatccactgataaatgctgttcattttcacttgcttatatacatg-atacttttctttatgacttgttttcttcaaatgttcttttttgcag------------------

upper sequence: GLYMA09G07520.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G169089_T01 (Zea mays), 5'ss of exon 2
AGTCATGCAGGACTGTTCAATCTCTGCATAGTAGTGCTTGTTGCCGTGAACAGCAGACTTATCATTGAGAATTTAATGAAGgtttgc--ccctcttccctct---atttttcatgtctatcctgcaaaatt------tggatttccaacttgtatgcatgca--tttatctgtgtgcagctgttt----taacttttttgtcatcggtgtgc-atttatgttttgcag-----
|| ||||| || ||  | ||||| ||||| || || ||  | || |||||||||||||| || ||||||||||||||||||||||    |  |||| | | |   ||||| |    ||    |   | ||       |  || |||  ||   || |||      || |   || |||  ||| |    ||| | |       || ||||   |||||  ||     |     
AGCCATGCTGGTCTTCTGAATCTATGCATTGTTGTTCTGATCGCAGTGAACAGCAGACTCATTATTGAGAATTTAATGAAGgtttattactttctttcttttttcattttcctcaccttcatttacagatccctcaatccatctccttctgaaatacatctggtcttcttcctgcgcatttgtctagtgtaaatctgacacattctgtgttttatttaaattggctggtgcag

upper sequence: GLYMA09G07520.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 2
AGTCATGCAGGACTGTTCAATCTCTGCATAGTAGTGCTTGTTGCCGTGAACAGCAGACTTATCATTGAGAATTTAATGAAGgtttgcccctcttccctctatttttcatgtctatcctgcaaaatttggatttcca-acttgtatgcatgcatttatc--tgtgtgcagctg--ttttaacttttttgtcatcggtgtgcat-ttatgttttgcag---------------------------------------------------
|||||||| || || ||||| ||||| |||||||||||||| || || |||||| | ||||||||||||||| | ||||||||||| | | | ||| |||| |       || |||| |    ||   |||||| | | ||  ||||||| |||| |   | | |  |||||  | |||| |||  | | |    |   ||  | || | ||  |                                                    
AGTCATGCGGGTCTCTTCAACCTCTGTATAGTAGTGCTTGTAGCTGTAAACAGCCGGCTTATCATTGAGAATCTTATGAAGgtttgtcac-cctccatctaatac---gatcaatccagttggatggtgatttctataatttaatgcatgtatttcttgttttttatagctgactcttaaatttcattttaaatcttgacacatcatttcttaaaaataattttgagcctacagctataggcagcttatctctcattgttgttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120493969|gb|EH222136.1|EH222136
EST:     CCGTGAACAGCAGACTTATCATTGAGAATTTAATGAAG                         TATGGTTGGTTGATCAAGTATGGCTTTTGGTTTAGTTCAAAATCATTGAGA
genomic: CCGTGAACAGCAGACTTATCATTGAGAATTTAATGAAGgtttgcccct ... tgttttgcagTATGGTTGGTTGATCAAGTATGGCTTTTGGTTTAGTTCAAAATCATTGAGA