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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCCCTTCCTAATTCCATTGGCTGCCTTTCTAAGCTCAAGGTTTTGAATGTCTCAGGCAACTTCATCGAATCCCTCCCCAAAACCATTGAGAATTGCAGgttccttcattttcatcatcacttctctttctattctatttttttatgataataaaatcatcatgttctgggattttgcatatatataaattaacttttc...

Basic information

species Glycine max
transcript GLYMA09G06920.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G06920.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G29880.1 (Arabidopsis thaliana), 5'ss of exon 2
AGTCCCTTCCTAATTCCATTGGCTGCCTTTCTAAGCTCAAGGTTTTGAATGTCTCAGGCAACTTCATCGAATCCCTCCCCAAAACCATTGAGAATTGCAGgttccttcattttcatcatcacttctctttctattctatttttttatgataataaaatcatcatgttctgggattttgcatatatataaattaacttttc
|  | ||||| || |||||||| || ||||||||||||||| |  | |||||||| ||||||||  |||  ||||||||| |||| ||| | ||||||||||| |  ||  |  | ||   ||   |     |  | | |  | |||||| ||||       |  |||     ||||   |   | |  |||  |     
AAGCTCTTCCAAACTCCATTGGTTGTCTTTCTAAGCTCAAGATCCTTAATGTCTCCGGCAACTTTCTCGTTTCCCTCCCCCAAACTATTCAAAATTGCAGgtttca-cacctcaaccaaatctggac----caaaccaatcatatatgatgataatgctgataaattcctctgttttcttttgttttggattttccag--

upper sequence: GLYMA09G06920.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0052g00390.t01 (Vitis vinifera), 5'ss of exon 2
AGTCCCTTCCTAATTCCATTGGCTGCCTTTCTAAGCTCAAGGTTTTGAATGTCTCAGGCAACTTCATCGAATCCCTCCCCAAAACCATTGAGAATTGCAGgttccttcattttcatcatcacttctctttctatt----ctatttttttatgataataaaatcatcatgttctgggattttgcatatatataaattaacttttc
| ||||| || || || ||||| || ||||| |||||||||||||||||  |||| || ||| ||||  ||  |||||||||||||||||| |||||||||||  ||   |          | |||||||||||       |   ||| ||  |  ||    || ||||        | ||    || |  | |   |      
AATCCCTCCCAAACTCAATTGGGTGTCTTTCAAAGCTCAAGGTTTTGAACATCTCTGGGAACCTCATTCAAAACCTCCCCAAAACCATTGAAAATTGCAGgtttgttttctcctccttgtgcatctctttctataggcatcaacatttgatcttcttagttccaccatgagagatattcttatgaattttcacaaagaga----