1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAGAAGCAGGAACTCGATGCCGCAAAGAAAAAGAGGTTCGAAACGCGGAAGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAGgtattaaaattaaaattgaatcttgaagcgttgcgttaataatgttttgttttttaatattttttttataatttgtgtttgtgtgtttgttttttcag
species | Glycine max |
transcript | GLYMA09G06860.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAG CAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTEST: gi|7285803|gb|AW598290.1|AW598290
genomic: ACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAGgtattaaaat ... gttttttcagCAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: AGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAG CAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTEST: gi|298188869|gb|HO035562.1|HO035562
genomic: AGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAGgtattaaaat ... gttttttcagCAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: AGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAG CAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTEST: gi|298175439|gb|HO015072.1|HO015072
genomic: AGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAGgtattaaaat ... gttttttcagCAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: AGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAG CAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTEST: gi|192302636|gb|FG994888.1|FG994888
genomic: AGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAGgtattaaaat ... gttttttcagCAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: AGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAG CAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTEST: gi|209706672|gb|BW676168.1|BW676168
genomic: AGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAGgtattaaaat ... gttttttcagCAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: AGCTGATTTTTAACAGAGCCAAACAGTACTCAGAGGAATACGACGAGCAG CAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTEST: gi|6072110|gb|AW101429.1|AW101429
genomic: AGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAGgtattaaaat ... gttttttcagCAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: CTGATTTTTTAACAGAAGCCATACAGTACTCACAGGAATACGACGAGCAG CAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTEST: gi|192307307|gb|FK001265.1|FK001265
genomic: CTGA-TTTTTAACAG-AGCCAAACAGTACTCAAAGGAATACGACGAGCAGgtattaaaat ... gttttttcagCAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: AGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAG CAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTEST: gi|24205580|gb|BU964833.1|BU964833
genomic: AGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAGgtattaaaat ... gttttttcagCAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: AGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAG CAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTEST: gi|151401089|gb|EV270903.1|EV270903
genomic: AGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAGgtattaaaat ... gttttttcagCAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: AGCTGATTTTTAACAGAGCCAAACAGTACTCGAAGGAATACGACGAGCAG CAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAGgtattaaaat ... gttttttcagCAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAAGCAGGAACTCGATGCCGCAAAGAAAAAGAGGTTCGAAACGCGGAAGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAGgtattaaaattaaaattgaatcttgaagcgttgcgttaataatgttttgttttttaatattttttttataatttgtgtttgtgtgtttgttttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG