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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATTTGAGGGTAATACCGGTATCATTGTCATTGCAGCTACTAACAGAGTTGACATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAGgtaagattatattagcaaatgcttaatgtgtttattaacaagcaaatcgttgaacatagtgcttttgcag

Basic information

species Glycine max
transcript GLYMA09G05820.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G05820.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G30950.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGATTTGAGGGTAATACCGGTATCATTGTCATTGCAGCTACTAACAGAGTTGACATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAGgtaagattatattagcaaatgcttaatgtgtttattaac---aagcaaatcgttgaacatagtgctt--ttgcag------------
||| ||||| ||||| || ||| | || ||  |||| || || || ||||  ||||||||||| ||||| ||||| ||||||||||| |||||  | ||||||  ||   ||||  | |   || || |||||  |||       | | || | || | | ||||||  ||  |             
TGGTTTTGAAGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctgattattacaca-ttgatatgttttgtaatcctgtactactcctagagc-ttgtgcttacttataatttctggtgcag

upper sequence: GLYMA09G05820.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 2
TGGATTTGAGGGTAATACCGGTATCATTGTCATTGCAGCTACTAACAGAGTTGACATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAGgtaag-------attatattagcaaatgcttaatgtgtttattaacaa-gcaaatcgttgaacatagtgcttttg--cag
||| ||||| || || || ||||| ||||| |||||||| |||||||| |  ||||||||||| ||||| || || ||||| ||||||||||| |||||||||||       | ||||||      ||| | || | |||||||  |  |  ||    | |   ||  ||||| |  |||
TGGTTTTGAAGGAAACACTGGTATAATTGTTATTGCAGCCACTAACAGGGCAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatagagaatatattgttttttgccttatct-tttattataagtgggaaatacttacgttaaagctttggagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|48575696|gb|CO036527.1|CO036527
EST:     ATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAG                         GTAACGGTTGATGTTCCAGATATACGGGGAAGGACTGAAATTTTAAAGGTT
genomic: ATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAGgtaagattat ... gcttttgcagGTAACGGTTGATGTTCCAGATATACGGGGAAGGACTGAAATTTTAAAGGTT
EST: gi|16283589|gb|BI945631.1|BI945631
EST:     TTGACATTCTTGATTCTGCATTGTTAAGGCCGGGACGATTTGATAGGCAG                         GTCACGGTTGATGTTCCAGATATACGAGGAAGGACTGAAATTTTAAAGGTT
genomic: TTGACATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAGgtaagattat ... gcttttgcagGTAACGGTTGATGTTCCAGATATACGGGGAAGGACTGAAATTTTAAAGGTT
EST: gi|18692866|gb|BM521714.1|BM521714
EST:     TTGACATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAT                         GTAACGGTTGATGTTCCAGATATACGGGGAAGGACTGAAATTTTAAAGGTT
genomic: TTGACATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAGgtaagattat ... gcttttgcagGTAACGGTTGATGTTCCAGATATACGGGGAAGGACTGAAATTTTAAAGGTT
EST: gi|193444554|gb|FK409824.1|FK409824
EST:     ACGATTTGATAGGCAG                         GTCACGGTTGATGTTCCAGATATACGAGGAAGGACTGAAATTTTAAAGGTT
genomic: ACGATTTGATAGACAGgtaagattat ... gcttttgcagGTAACGGTTGATGTTCCAGATATACGGGGAAGGACTGAAATTTTAAAGGTT
EST: gi|15589722|gb|BI674338.1|BI674338
EST:     TTGACATTCTTGATTCTGCATTGTTAAGGCCGGGACGATTTGATAGGCAG                         GTCACGGGTGATGTTCCAGATATACG
genomic: TTGACATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAGgtaagattat ... gcttttgcagGTAACGGTTGATGTTCCAGATATACG