Sequence
atgc intronic sequence ATGC exonic sequenceGATTCGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCAAGgtagcaagcatattaccgtcatttctctctctgacaaattcttattttctaaattaactttcttccttgcgggacacgctaacggtggtgccacctcgccatgtag
Basic information
species | Glycine max |
transcript | GLYMA09G03900.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G03900.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S25_173V6.1 (Physcomitrella patens), 5'ss of exon 4
GATTCGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCAAGgtagcaagcatattaccgtcatttctctctctgacaaattcttattttctaaattaactttcttccttgcgggacacgctaacggtggtgccacctcgccatg-tag
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TATATGCCATTGAAACTCGCACGGATGTTGATATAATGGACGATGGCTTTAAGTGGCGCAAGTACGGCCAGAAAGCTGTCAAAAACAGCCCTTATCCCAGgtac--atcatgtcgatacc-cttcttatcatgacag-----taagatcgaatatgcctcatgtcgggacgggacagattgaaatcatttggatttggatgcggcag
upper sequence: GLYMA09G03900.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S198_83V6.1 (Physcomitrella patens), 5'ss of exon 2
GATTCGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCAAGgtagcaagcatattaccgtcatt-tctctctctgacaaattcttattttctaaattaactttcttccttgcgggacacgctaacggtggtgccacctcgccatgtag
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GATATGCTATCAAAACCAGAACTGATATGGATGTCCTCGATGATGGTTTCAAGTGGCGCAAGTATGGGCAGAAAGCCGTGAAGAACAGCCCTCATCCTAGgta--agctttaataccttttttatgacttgaagttcaacttttaacttgtag--tattctgcagtaatcaactgctagcctatcgtagtacgacaatataagc---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254328785|gb|GR833157.1|GR833157EST: AAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCAAG GAGCTACTACCGTTGCACCAGCGCGGGTTGCGGCGTTAAGAAGCGCGTGGA
genomic: AAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCAAGgtagcaagca ... cgccatgtagGAGCTACTACCGTTGCACCAGCGCGGGTTGCGGCGTTAAGAAGCGCGTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATTCGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCAAGgtagcaagcatattaccgtcatttctctctctgacaaattcttattttctaaattaactttcttccttgcgggacacgctaacggtggtgccacctcgccatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG