Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagtttttctgtctttctgaatcgtttagttttcaatatgtgtcaagagtttaataagcacgtattagcgacaaatcagaaatgatgttgataaat...

Basic information

species Glycine max
transcript GLYMA09G02790.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02790.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G24830.1 (Arabidopsis thaliana), 5'ss of exon 2
CAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagtttttctgtctttctgaatcgtttagttttcaatatgtgtcaagagtttaataagcacgtattagcgacaaatcagaaatgatgttgataaat
| |||||||| |  ||||||||||| ||||||||||| | ||| ||| | || ||||| |||||||||  ||||||||||||  |||||||||| |||||||||   || | |    ||  |  ||| | || ||||   |||||   | | ||||  ||       | | |       |      |  | ||| | |  
CCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTTGAGGGAGTACCACCTCCTTATGACAAGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAgtaatgtttctgcaactttgttctatcttgtaattttggttatgttcaatgtgttt--tagctgtcaactggttttcgtttgtt--ttgttttgtttag-

upper sequence: GLYMA09G02790.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G13170.1 (Arabidopsis thaliana), 5'ss of exon 2
CAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagtttttctgtctttctgaatcgtttagttttcaatatgtgtcaagagtttaataagcacgtattagcgacaaatcagaaatgatgttgataaat
| |||||||| |  ||||| |||||||| |||||||||| ||| |||||||| ||||| || |||||||  |||||||||||| |||||||||| || |||||||   | || ||| ||| ||    |||| |||| ||  ||     || |||| |||   ||  | |  |  |   ||| |      | || || |  
CCAAGCGTGGTGCTGCTGCACTTGCTCGCTTGAAGGTTTTTGAGGGAATCCCACCTCCTTACGACAAGATTAAGAGAATGGTTATTCCTGATGCTCTTAAgtaagttctcttttgtttttttgttatgttttgttt-catgattctgtaatagtt-aatgtccaaatgt--gttaatgatctgttgattttttaatcag-

upper sequence: GLYMA09G02790.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G07110.1 (Arabidopsis thaliana), 5'ss of exon 2
CAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagtttttctgtctttctgaatcgtttagttttcaatatgtgtcaagagt-ttaataagcacgtattagcgac-aaatcagaaatgatgttgataaat---
| |||||||| |    ||| ||||| || |||||||| | ||||||| | ||| ||||||||||||||| |||||| ||||| ||||||||||| |||||||    ||  || |  | ||     |   ||  |||||| | |   |||    |  | | ||| |  ||    |    |||     | |  |  |  |  ||   
CTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAGGTCTTTGAAGGAGTTCCTACTCCATATGACAAGATCAAGAGGATGGTCGTTCCTGATGCTCTCAAgttt--gtccttttaccctttcattttcattttttttcagtttccttcatttatacttacaagtagctacagtctctgaaactttgattcttccttcttgatcag

upper sequence: GLYMA09G02790.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G48760.1 (Arabidopsis thaliana), 5'ss of exon 2
CAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagtttttctgtctttctgaatcgtttagttttcaatatgtgtcaagagtttaataagcacgtattagcgacaaatcagaaatgatgttgataaat
| |||||||| |  |||||  | || ||| ||||||| ||||||||  | ||| ||||||||||||||| |||||| |||||  | |||||||| |||||||  |    |||     ||| ||  |  ||   ||||  ||  ||   ||  |||  |    |  | |||   ||  | |||     | | ||  | |  
CGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAAGGTATATGAAGGTGTTCCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAgtttgttccttttaccatttttg--ttcttctcttttggatccgt---aactgttctactt-cgggcattgatgatta-tcattgtggctcttcttcag-

upper sequence: GLYMA09G02790.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0005g06490.t01 (Vitis vinifera), 5'ss of exon 2
CAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagtttttctgtctttctgaatcgtttagttttcaatatgtgtcaa---gagtttaat---aagcacgtattagcgacaa--atcagaaatgatgttgataaat------------------------------------
| |||||||| | ||| || ||||| || ||||||| |||||| ||||||||||| |||||||| ||||  ||||| |||||  |||||||||||||||||| ||   |||  ||| | |||  ||  |     | ||   || | | ||   | ||||  |   |||    |  |      ||  ||  |   | || ||| |   |                                    
CCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAAGGCTTATGAGGGAATCCCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAAgttag---tttcttgtttctcttgattatcgttgtctctgaatttcttaattggggtttggtttcaagtctattgtttttttaatcatgtgttttaatcttgtttcttgctaattgatttgatggttggttgaaataaaattag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120492937|gb|EH221104.1|EH221104
EST:     CCTCCTCCATATGCCAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|213600139|gb|DB970243.1|DB970243
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|209708662|gb|BW678839.1|BW678839
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|207826033|gb|GD799788.1|GD799788
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|209700950|gb|BW661317.1|BW661317
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|10845453|gb|BF068572.1|BF068572
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|11413396|gb|BF425407.1|BF425407
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|298192962|gb|HO033396.1|HO033396
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|58019129|gb|CX705871.1|CX705871
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACA-A-GTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|254345112|gb|GR851488.1|GR851488
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|4397463|gb|AI496460.1|AI496460
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|14259726|gb|BG882634.1|BG882634
EST:     CCTCCTCCATATGACAAGACCAAAAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTCTGAG-CTTCAAAAAGGACAC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGT-TGAGGCTTCAGAAGGGACAC
EST: gi|120493991|gb|EH222158.1|EH222158
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|193518630|gb|FK472715.1|FK472715
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGATTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|22931755|gb|BU548894.1|BU548894
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCT
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCT
EST: gi|13180779|gb|BG352119.1|BG352119
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|298192908|gb|HO033342.1|HO033342
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGTGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|20075807|gb|BQ094590.1|BQ094590
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|151408381|gb|EV278189.1|EV278189
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|14990945|gb|BI316618.1|BI316618
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|18713999|gb|BM522755.1|BM522755
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|23733429|gb|BU764914.1|BU764914
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|192328024|gb|FK021770.1|FK021770
EST:     CCTCCTCCATATGACAAGACCAAGAGAGTGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|209700949|gb|BW661316.1|BW661316
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|151396042|gb|EV265919.1|EV265919
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|254331326|gb|GR843338.1|GR843338
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|192294449|gb|FG987378.1|FG987378
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|298185183|gb|HO030396.1|HO030396
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|193725853|gb|FK660175.1|FK660175
EST:     CTCCTCCATATGACAAGACCAAGAGTAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACAC
genomic: CTCCTCCATATGACAAGACCAAGAG-AATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACAC
EST: gi|6846057|gb|AW348347.1|AW348347
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|4313752|gb|AI460871.1|AI460871
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGNGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|7232973|gb|AW568324.1|AW568324
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTACTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACACGTATTGTGTGCTGGGCCAAGT-GT
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGC-AGGTTGT
EST: gi|16997203|gb|BM086575.1|BM086575
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|8827629|gb|BE211359.1|BE211359
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|298166349|gb|HO008586.1|HO008586
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTC
EST: gi|6913397|gb|AW394927.1|AW394927
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         TGTGTTGAGGCTTCAGAATGTACACATGTATTGTGTGCATGT-CATGATGT
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGC-TGGGCAGGTTGT
EST: gi|19347245|gb|BM892125.1|BM892125
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|192307103|gb|FK002727.1|FK002727
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|192331549|gb|FK023425.1|FK023425
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|58019326|gb|CX706068.1|CX706068
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGTGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|4303703|gb|AI443514.1|AI443514
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|120493138|gb|EH221305.1|EH221305
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|42723007|gb|CK768906.1|CK768906
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|17024028|gb|BM095062.1|BM095062
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|298181971|gb|HO026146.1|HO026146
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|20075731|gb|BQ094514.1|BQ094514
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|298171356|gb|HO016388.1|HO016388
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|17023613|gb|BM094647.1|BM094647
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAAGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|193663175|gb|FK604495.1|FK604495
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|193338371|gb|FK305174.1|FK305174
EST:     ATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: ATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|7924979|gb|AW831005.1|AW831005
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAAGGACACAAGTATTGTGTGCTTGGCAGGTTGGC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|58018845|gb|CX705587.1|CX705587
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACA-A-GTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|20498735|gb|BQ273665.1|BQ273665
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
EST: gi|5606895|gb|AI900993.1|AI900993
EST:     CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAA                         GGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC
genomic: CCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagttt ... ttggaatcagGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTGTGCTGGGCAGGTTGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCACTCAAgtaagagtttttctgtctttctgaatcgtttagttttcaatatgtgtcaagagtttaataagcacgtattagcgacaaatcagaaatgatgttgataaat

- - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA