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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAATACTTCTCTGAAGACTGGGCAACGAATAGTGCCAAGGAAAATTTTGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaacttatgtgatatggtcaatgatcaattgaccatgccataattcatgatgaagaattgtctgtgtgtttgatcaaattctgtatgtgattgggatagattgctgatcactgattcgtatatgacctcctttgagtattgacttcatttcttttgccttcatgggctttttcatttgacag

Basic information

species Glycine max
transcript GLYMA09G02270.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332965|gb|FK024614.1|FK024614
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCACACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|120493426|gb|EH221593.1|EH221593
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|120492487|gb|EH220654.1|EH220654
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|14259369|gb|BG882277.1|BG882277
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|298184953|gb|HO030166.1|HO030166
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGGCCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|151410972|gb|EV280787.1|EV280787
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|12689807|gb|BG156143.1|BG156143
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|151405407|gb|EV275221.1|EV275221
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|298191889|gb|HO035971.1|HO035971
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|151410188|gb|EV280003.1|EV280003
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|298186013|gb|HO031174.1|HO031174
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|19348506|gb|BM893038.1|BM893038
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|38192921|gb|CF922127.1|CF922127
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|213607061|gb|DB965059.1|DB965059
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|8670053|gb|BE191160.1|BE191160
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|14990780|gb|BI316453.1|BI316453
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|298178097|gb|HO027480.1|HO027480
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|298166245|gb|HO009216.1|HO009216
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|38192996|gb|CF922202.1|CF922202
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|298179376|gb|HO027847.1|HO027847
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|298182838|gb|HO031573.1|HO031573
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGGAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|14990797|gb|BI316470.1|BI316470
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|151406134|gb|EV275949.1|EV275949
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|192321195|gb|FK014285.1|FK014285
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|120532300|gb|EH260433.1|EH260433
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAN
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAA-
EST: gi|298170470|gb|HO019094.1|HO019094
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
EST: gi|298166774|gb|HO010213.1|HO010213
EST:     TGAGAAAGTTGTCTTCAACAAGACTCAGAAGGCCAGTGCCCGCACAGAAG                         CGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG
genomic: TGAGAAAGTTGTCTTCAACAAGACTCAGAAGACCAATGCCCGCACAGAAGgtgtgtaaaa ... catttgacagCGGAAATAGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAG