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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGAAATGGCAGAGGTAGAAGAGGATATGTATTTCCGTGGCAGGGCATTTGGTGAATCAGATTCGGATGATGACGACGACTACGAATATGACCCTTTGgtttgttttgactcataagcaaaaccttgtttgctcattttaactgtgaaaccctattcaatgttgtgtgtgtggcctaatgtgtctgtgtgttatcaca...

Basic information

species Glycine max
transcript GLYMA09G02070.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02070.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0568g00010.t01 (Vitis vinifera), 5'ss of exon 2
------TAATGAAATGGCAGAGGTAGAAGAGGATATGTATTTCCGTGGCAGGGCATTTGGTGAATCAGATTCGGATGATGACGACGACTACGAATA--TGACCCTTTGgtttgtt---ttgactcataagcaaaaccttgtttgctcattttaactgtgaaaccctattcaatgttgtgtgtgtggcctaatgtgt-ctgtgtg-ttatcaca----------------------------------------------------------------------------
      | ||||||||||||| ||||| || |||||||| |||||||| || | | | ||||| ||||| ||||||||||| || || || ||  |  ||     ||  |||  |   || | |         |   |  |||| |  | ||       |||   | ||||   |||| ||  |    | || | | || | || || || |                                                                             
AGATGATTATGAAATGGCAGAAGTAGATGATGATATGTACTTCCGTGGTAGAGTAATGGGTGATTCAGAGTCGGATGATGATGATGAATATGACCACTTGgtttgttcttttcctaccttaaatagcgcattgattataatttggttttcttcttcccaaaatattgttcatgtttgtttggctattttcattttttctttttgcttgtctctaccaacaaaacataaaaaggaaaatgttgagttcctttgtaagattttttccttttcctttttttttttggtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208107777|gb|GD905663.1|GD905663
EST:     TTGGTGAATCAGATTCGGATGATGACGACGACTACGAATATGACCCTTTG                         GAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGAT
genomic: TTGGTGAATCAGATTCGGATGATGACGACGACTACGAATATGACCCTTTGgtttgttttg ... cctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGAT
EST: gi|207708576|gb|GD691910.1|GD691910
EST:     TTGGTGAATCAGATTCGGATGATGACGACGACTACGAATATGACCCTTTG                         GAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGAT
genomic: TTGGTGAATCAGATTCGGATGATGACGACGACTACGAATATGACCCTTTGgtttgttttg ... cctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGAT