1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CCTAATCTAAATAAGTTTGTATCACTTGGAAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAGgtacatctaaccttactttgtttcatgtttaattgttcaagggcatgtttgattcacctctcgcttttttgttttaaaaactgtttttttttaaaatgat...
species | Glycine max |
transcript | GLYMA09G01270.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAG CAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTGEST: gi|18692857|gb|BM521705.1|BM521705
genomic: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAGgtacatctaa ... ttcaatgcagCAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTG
EST: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAG CAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTGEST: gi|213616587|gb|DB967545.1|DB967545
genomic: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAGgtacatctaa ... ttcaatgcagCAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTG
EST: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAG CAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTGEST: gi|254346898|gb|GR856620.1|GR856620
genomic: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAGgtacatctaa ... ttcaatgcagCAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTG
EST: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAG CAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTGEST: gi|213594530|gb|DB957977.1|DB957977
genomic: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAGgtacatctaa ... ttcaatgcagCAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTG
EST: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAG CAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTGEST: gi|151410471|gb|EV280286.1|EV280286
genomic: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAGgtacatctaa ... ttcaatgcagCAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTG
EST: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAG CAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTGEST: gi|19453154|gb|BM954564.1|BM954564
genomic: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAGgtacatctaa ... ttcaatgcagCAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTG
EST: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAG CAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTGEST: gi|7924174|gb|AW830200.1|AW830200
genomic: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAGgtacatctaa ... ttcaatgcagCAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTG
EST: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAG CAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTGEST: gi|16996748|gb|BM086120.1|BM086120
genomic: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAGgtacatctaa ... ttcaatgcagCAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTG
EST: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAG CAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTGEST: gi|15664491|gb|BI701862.1|BI701862
genomic: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAGgtacatctaa ... ttcaatgcagCAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTG
EST: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAG CAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTGEST: gi|192327116|gb|FK015508.1|FK015508
genomic: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAGgtacatctaa ... ttcaatgcagCAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTG
EST: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAG CAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTG
genomic: AAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAGgtacatctaa ... ttcaatgcagCAACTGAGCCAACCTTGAGGGACAATGCGGTTTTGAGGCAGAAAGCACTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTAATCTAAATAAGTTTGTATCACTTGGAAGACCAGCCTGGAAGGAAGCTCGTGCTACTCTTCAAAAGCTTTTATCAGgtacatctaaccttactttgtttcatgtttaattgttcaagggcatgtttgattcacctctcgcttttttgttttaaaaactgtttttttttaaaatgat
- - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - AAGGAA