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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTAGCGATGCGGCGCAGACGCAGAAGAAGCTGAAGATTGGCGTGGTTTTGTCCGGTGGCCAGGCTCCCGGAGGCCACAATGTCATTTCTGGAATCTTCGgtaacgctcgttttcgaatccgattgcttttctttcttcgtcttcttcttcttcttcttcttttgagatttaactttttttcttcgatcgtcttag

Basic information

species Glycine max
transcript GLYMA09G01050.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0116g00360.t01 (Vitis vinifera), 5'ss of exon 2
CGTAGCGATGCGGCGCAGACGCAGAAGAAGCTGAAGATTGGCGTGGTTTTGTCCGGTGGCCAGGCTCCCGGAGGCCACAATGTCATTTCTGGAATCTTCGgtaacgctcgtttt--cgaatccgattgcttttctttcttcgtcttcttcttcttcttcttcttttgagatttaactttttttcttcgatcgtct-tag
 ||      |||  || | || |  ||||| ||||||||||||| ||| |||| || ||||| || |||||||| |||||||| || |||||||| |||||| | | ||| ||   |  ||  |  | ||| | |   || | ||  |  ||  | |     ||    |   |||   |||||| |   | |||  |||
AGTGAGTCCGCGCTGCCGTCGGATCAGAAGTTGAAGATTGGCGTTGTTCTGTCTGGAGGCCAAGCGCCCGGAGGACACAATGTGATCTCTGGAATATTCGgtgaggatcgattcgacatatttggat-cttgtgtgattttgactcttgtttgatgtggaaattcgttggaataatgatttttcgtttgttgtcggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20448377|gb|BQ252501.1|BQ252501
EST:     GTCCGGTGGCCAGGCTCCCGGAGGCCACAATGTCATTTCTGGAATCTTCG                         ATTACCTGCAAGAGCGCGCACCAGGAAGCACGTTGTATGGTTTCAA-GGTG
genomic: GTCCGGTGGCCAGGCTCCCGGAGGCCACAATGTCATTTCTGGAATCTTCGgtaacgctcg ... atcgtcttagATTACCTGCAAGAGCGCGCACCAGGAAGCACGTTGTATGGTTTCAAAGGTG
EST: gi|5342441|gb|AI794725.1|AI794725
EST:     GTCCGGTGGCCAGGCTCCCGGAGGCCACAATGTCATTTCTGGAATCTTCG                         ATTACCTGCAAGAGCGCGCACCAGGAAGCACGTTGTATGGTTTCAAAGGTG
genomic: GTCCGGTGGCCAGGCTCCCGGAGGCCACAATGTCATTTCTGGAATCTTCGgtaacgctcg ... atcgtcttagATTACCTGCAAGAGCGCGCACCAGGAAGCACGTTGTATGGTTTCAAAGGTG
EST: gi|15204845|gb|BI427613.1|BI427613
EST:     GTCCGGTGGCCAGGCTCCCGGAGGCCACAATGTCATTTCTGGAATCTTCG                         ATTACCTGCAAGAGCGCGCACCAGGAAGCACGTTGTATGGTTTCAAAGGTG
genomic: GTCCGGTGGCCAGGCTCCCGGAGGCCACAATGTCATTTCTGGAATCTTCGgtaacgctcg ... atcgtcttagATTACCTGCAAGAGCGCGCACCAGGAAGCACGTTGTATGGTTTCAAAGGTG