Sequence
atgc intronic sequence ATGC exonic sequenceATAGTCCAACTCAGCTAACGGGTTGGAAAATCGGTGGTGGTGATCCATGTGGAGAGTCATGGAAAGGGGTAACGTGTGAGGGATCAGCCGTTGTTTCCATgtaagagattcactttatattgcacatttctgatttatttattttatatgtttgtttgttgtttaaaaatttgttttgcaatcaaggttttaaattgtgg...
Basic information
species | Glycine max |
transcript | GLYMA09G00970.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G00970.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G22130.1 (Arabidopsis thaliana), 5'ss of exon 2
ATAGTCCAACTCAGCTAACGGGTTGGAAAATCGGTGGTGGTGATCCATGTGGAGAGTCATGGAAAGGGGTAACGTGTGAGGGATCAGCCGTTGTTTCCATgtaagagattcactttatattgcacatttctgatttatttattttatatgtttgtttgttgtttaaaaatttgttttgcaatcaaggttttaaattgtgg---
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ATAGTCCTTCACAGCTAACCAATTGGAAAAATGGTGGTGGTGATCCATGTGGAGAGTCATGGAAAGGGATTACTTGTGAGGGCTCTGCAGTTGTCACTATgtaaagaatcagattttgagtat-tatttttgttctttccacttgcattgatttgtgattgtcttataatgt-tgttgttttctgttgttatgattgtaacag
upper sequence: GLYMA09G00970.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 2
ATAGTCCAACTCAGCTAACGGGTTGGAAAATCGGTGGTGGTGATCCATGTGGAGAGTCATGGAAAGGGGTAACGTGTGAGGGATCAGCCGTTGTTTCCATgtaag-agattcactttatattgcacat-ttctgatttatttatttta-tatg-tttgtttgttgtttaaaaatttgttttgcaatcaaggttttaaattgtgg-
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ATGGTCCTTCCCAGCTAACTGGTTGGACAAATAGTAGTGGTGATCCGTGTGGAGAGTCATGGAAAGGGGTTACTTGTGAGGGTTCAGCTGTTGTTTCCATgtgagtatgtttatctcatttaggttgtactctgtattgtatatttgggtataatctgtactttgatttagttgatgagatgta-ttgctgttttgttttaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193614082|gb|FK562754.1|FK562754EST: GGAGAGTCATGGAAAGGGGTAACGTGTGAGGGATCAGCCGTTGTTTCCAT TAAACTCTCAGGTTTAGGACTCGATGGGACTCTGGGGTACTTGCTTTCAGA
genomic: GGAGAGTCATGGAAAGGGGTAACGTGTGAGGGATCAGCCGTTGTTTCCATgtaagagatt ... tgctggatagTAAACTCTCAGGTTTAGGACTCGATGGGACTCTGGGGTACTTGCTTTCAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAGTCCAACTCAGCTAACGGGTTGGAAAATCGGTGGTGGTGATCCATGTGGAGAGTCATGGAAAGGGGTAACGTGTGAGGGATCAGCCGTTGTTTCCATgtaagagattcactttatattgcacatttctgatttatttattttatatgtttgtttgttgtttaaaaatttgttttgcaatcaaggttttaaattgtgg
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