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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTACAACTCCTTACTGCTAACACCAGGAGTGACCAATCTACCGTGGATGACGGGCTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAGgtacataatttaatttaatgtcatatttgtatcgatttttatttattttacatagcctttgaaatttaagtgttaattactcactgaattgtatactttttttattcag

Basic information

species Glycine max
transcript GLYMA09G00820.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21993769|gb|BQ785297.1|BQ785297
EST:     ATGACGGGCTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAG                         CTTGCACAGTTGCAAGTGGAGCTTCAACGCATGAACGCTGAGAACAAGAAG
genomic: ATGACGGGCTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAGgtacataatt ... ttttattcagCTTGCACAGTTGCAAGTGGAGCTTCAACGCATGAACGCTGAGAACAAGAAG
EST: gi|21995158|gb|BQ786686.1|BQ786686
EST:     ATGACGGGCTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAG                         CTTGCACAGTTGCAAGTGGAGCTTCAACGCATGAACGCTGAGAACAAGAAG
genomic: ATGACGGGCTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAGgtacataatt ... ttttattcagCTTGCACAGTTGCAAGTGGAGCTTCAACGCATGAACGCTGAGAACAAGAAG
EST: gi|209698051|gb|BW680372.1|BW680372
EST:     ATGACGGGCTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAG                         CTTGCACAGTTGCAAGTGGAGCTTCAACGCATGAACGCTGAGAACAAGAAG
genomic: ATGACGGGCTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAGgtacataatt ... ttttattcagCTTGCACAGTTGCAAGTGGAGCTTCAACGCATGAACGCTGAGAACAAGAAG
EST: gi|14990745|gb|BI316418.1|BI316418
EST:     ATGACGGGCTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAG                         CTTGCACAGTTGCAAGTGGAGCTTCAACGCATGAACGCTGAGAACAAGAAG
genomic: ATGACGGGCTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAGgtacataatt ... ttttattcagCTTGCACAGTTGCAAGTGGAGCTTCAACGCATGAACGCTGAGAACAAGAAG
EST: gi|213614601|gb|DB969531.1|DB969531
EST:     ATGACGGGCTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAG                         CTTGCACAGTTGCAAGTGGAGCTTCAACGCATGAACGCTGAGAACAAGAAG
genomic: ATGACGGGCTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAGgtacataatt ... ttttattcagCTTGCACAGTTGCAAGTGGAGCTTCAACGCATGAACGCTGAGAACAAGAAG
EST: gi|17964331|gb|BM271068.1|BM271068
EST:     GAGCTAAAACCACCGAG                         CTTGCACAGTTGCAAGTGGAGCTTCAACGCATGAACGCTGAGAACAAGAAG
genomic: GAGCCAAAACCACCGAGgtacataatt ... ttttattcagCTTGCACAGTTGCAAGTGGAGCTTCAACGCATGAACGCTGAGAACAAGAAG
EST: gi|14205880|gb|BG839558.1|BG839558
EST:     ATGACGGGCTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAG                         CTTGCACAGTTGCAAGTGGAGCTTCAACGCATGAACGCTGAGAACAAGAAG
genomic: ATGACGGGCTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAGgtacataatt ... ttttattcagCTTGCACAGTTGCAAGTGGAGCTTCAACGCATGAACGCTGAGAACAAGAAG