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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTATCAAGCACTTTTCCAAAAGGGTTATAGGGCATTGAACTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATGgtgtgtgttaactgttaaattaaccttttttcttttctttttaagttcattacacgactctttgggaaattgagtaaattgtcaatttttgtttttattt...

Basic information

species Glycine max
transcript GLYMA09G00580.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040851|gb|BM309145.1|BM309145
EST:     CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATG                         TTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATA
genomic: CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATGgtgtgtgtta ... ccatttgcagTTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATA
EST: gi|207711712|gb|GD694188.1|GD694188
EST:     CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATG                         TTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATA
genomic: CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATGgtgtgtgtta ... ccatttgcagTTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATA
EST: gi|151401621|gb|EV271434.1|EV271434
EST:     CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATG                         TTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATA
genomic: CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATGgtgtgtgtta ... ccatttgcagTTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATA
EST: gi|15000262|gb|BI321076.1|BI321076
EST:     CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATG                         TTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATA
genomic: CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATGgtgtgtgtta ... ccatttgcagTTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATA
EST: gi|193641551|gb|FK592377.1|FK592377
EST:     CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATG                         TTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATA
genomic: CTCTGGGCCTTGCAGTCCAGCTAGAGTTGTTGGTACTTTTGCATCCAATGgtgtgtgtta ... ccatttgcagTTGGAGATGCCGTTAATTTAAAGAAATGGTTGCTATTGGGAGCGGCAAATA