1 5' 3' | 2 5' 3' | 3 5' 3' |
ATCATATGACAAAGATCAAGATACCTTTCGCCATTACTTTCTTGTATTGCCCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagttatacattgtctatagtaattattgtgctactagaaacatgtcctttttgactgctttcaagagctgattgtgtaacttttgcatactttttgaaaatacacttatgcattgaatag
species | Glycine max |
transcript | GLYMA08G46570.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAATTCACATTGTAAGGAG GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAEST: gi|7028432|gb|AW458215.1|AW458215
genomic: AAATTCACATTG-AAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCA
EST: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAAGAG GTCATGTGGACATTTTCCCTGTATTTGGGAGCTGGTGCTATACTTCCTCAAEST: gi|7693494|gb|AW761586.1|AW761586
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAA GTCATGTGGACATTATCCCTGTATTTGGAAGCTGTTGCTATACTTTCTCAAEST: gi|193442863|gb|FK408357.1|FK408357
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG GTACATGTGGACATTTTCCCTGTATTTGGAAGCEST: gi|31561500|gb|CD487338.1|CD487338
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGT-CATGTGGACATTTTCCCTGTATTTGGAAGC
EST: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAAEST: gi|24136162|gb|BU926672.1|BU926672
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAAEST: gi|10232336|gb|BE801224.1|BE801224
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTTCAEST: gi|209715072|gb|BW677115.1|BW677115
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCT-CA
EST: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAAEST: gi|13252025|gb|BG362928.1|BG362928
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAAEST: gi|11412647|gb|BF424658.1|BF424658
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG GTCATGTGGACATTNTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAAEST: gi|151401246|gb|EV271060.1|EV271060
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAAEST: gi|7588285|gb|AW704084.1|AW704084
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCATATGACAAAGATCAAGATACCTTTCGCCATTACTTTCTTGTATTGCCCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagttatacattgtctatagtaattattgtgctactagaaacatgtcctttttgactgctttcaagagctgattgtgtaacttttgcatactttttgaaaatacacttatgcattgaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG