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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATATGACAAAGATCAAGATACCTTTCGCCATTACTTTCTTGTATTGCCCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagttatacattgtctatagtaattattgtgctactagaaacatgtcctttttgactgctttcaagagctgattgtgtaacttttgcatactttttgaaaatacacttatgcattgaatag

Basic information

species Glycine max
transcript GLYMA08G46570.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208154619|gb|GD952746.1|GD952746
EST:     AAATTCACATTGTAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCA
genomic: AAATTCACATTG-AAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCA
EST: gi|192306206|gb|FG996834.1|FG996834
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|7028432|gb|AW458215.1|AW458215
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAAGAG                         GTCATGTGGACATTTTCCCTGTATTTGGGAGCTGGTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|7693494|gb|AW761586.1|AW761586
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAA                         GTCATGTGGACATTATCCCTGTATTTGGAAGCTGTTGCTATACTTTCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|193442863|gb|FK408357.1|FK408357
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTACATGTGGACATTTTCCCTGTATTTGGAAGC
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGT-CATGTGGACATTTTCCCTGTATTTGGAAGC
EST: gi|6566143|gb|AW233782.1|AW233782
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|209715073|gb|BW677116.1|BW677116
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGNAATTCACATTGAAGGAG                         GTCATGT-GACANCTTNCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACA-TTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCA
EST: gi|9564202|gb|BE473711.1|BE473711
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|31561500|gb|CD487338.1|CD487338
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|10252890|gb|BE820656.1|BE820656
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|192325724|gb|FK015081.1|FK015081
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|24136162|gb|BU926672.1|BU926672
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|10232336|gb|BE801224.1|BE801224
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTTCA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCT-CA
EST: gi|192306207|gb|FG996835.1|FG996835
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|209715072|gb|BW677115.1|BW677115
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|27424798|gb|CA936318.1|CA936318
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|208059246|gb|GD859474.1|GD859474
EST:     AAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: AAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|13252025|gb|BG362928.1|BG362928
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|7147282|gb|AW509204.1|AW509204
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|11412647|gb|BF424658.1|BF424658
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTNTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|151401246|gb|EV271060.1|EV271060
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
EST: gi|7588285|gb|AW704084.1|AW704084
EST:     CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAG                         GTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA
genomic: CCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagt ... cattgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCATATGACAAAGATCAAGATACCTTTCGCCATTACTTTCTTGTATTGCCCTGCTTACTATTGGCCCTATTAATCAATGAGAAATTCACATTGAAGGAGgttagtaagttatacattgtctatagtaattattgtgctactagaaacatgtcctttttgactgctttcaagagctgattgtgtaacttttgcatactttttgaaaatacacttatgcattgaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG