Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattatttcactcttttttttaattataaaatatttcgtatttctacttgttcttggtggtgttcgtgtgttgtgctttcaaagaaagttgatttatt...

Basic information

species Glycine max
transcript GLYMA08G45770.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 5'ss of exon 2
TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattatt-tcactcttttttttaattataaaatatttcgtatttctacttgttcttggtggtgttcgtgtgttgtgctttcaaagaaagttgatttatt
|||||||||||||| || ||||| || ||||||||||||||||||||||| ||||| | ||| |||| | |||| || |      |      | |      ||||     | |    |    ||||| || | |||    |     |||  |  |     | | | 
TTCAACATCGCGAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTgtgagtattctcgccgccgctcccccgtttgtttcgtttccccaatattagagagagtggtgttggtagtggcaagccgaatcagcgcgaacccttgtgt-

upper sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 5'ss of exon 2
TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattatttcactcttttttttaattataaaatatttcgtatttctacttgttcttggtggtgttcgtgtgttgtgctttcaaagaaagttgatttatt----
||||||||||| || || ||||| || ||||||||||||||||||||||| ||||| | ||| |||| | |  | | |  | | | |   |  | |      || | ||   |  ||  | ||| | |  || ||  | ||| |     ||   ||    |   |    
TTCAACATCGCCAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTgtgagtgctcctccttctctctctctcttgatgctgatc-tgttctgaaatg--cgtggagat-ctcttgcatcgtgttaatctagcttgtccgctcggtcctt

upper sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G10360.1 (Arabidopsis thaliana), 5'ss of exon 2
TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaa-----ttatttcactcttttttttaattataaaatatttcgtatttctacttgttcttggtggtgttcgtgtgttgtgctttcaaagaaagttgatttatt
|||||| |||| ||||| ||||| || || || ||||| ||||||||||| |||||||  |||||||||     ||  || |       ||||  | ||  | |  ||   ||||   ||| ||    || | ||  |     | |||| |  |||   ||  | ||   
TTCAACGTCGCCAATCCGACCACCGGGTGTCAAAAGAAACTCGAGATCGATGACGATCAAAAACTgtaagatctttgctttaaatcacattttcttcatggatttgtttacatttg-gcttattgagtgtagagtgtgaacaatctgctat-gaagttcgtaaaatt---

upper sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 2
TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattatttcactcttttttttaattataaaatatttcgtatttctactt-gttcttggtggt---gttcgtgtgttg-tgctttcaaagaaagttgatttatt
|||||| | |||||||| || |||||||||||||||||||||||||||||||| || | ||||||||||  ||||  ||  | | ||| ||  | |   ||||   ||   || || || || ||| |     |   |   ||| || ||  | | |    || |     
TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACTgtaag-attttgcttctctgtttcatcttcattcatttttaatagatatttcgtgctaggttgccagatctattgattggtgtttgtatatatcactgtta----

upper sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 2
TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattatttcactcttttttttaattataaaatatttcgtatttc-tacttgttcttggtggtgt-tcgtgtgttgtgctttcaaagaaagttgatttatt
||||| || |||||||| || || || || ||||| |||||||| ||||||||||| | ||||||||||  | ||   |    |||    ||||  | |  || | |||   ||  | ||| || |  | | || ||| |     ||  || | | |||   |||| 
TTCAATATTGCGAATCCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACTgtaagaaatttctttgaatttgattttattcagttgttggcattaaatatattttcgtgttattatctcttgtttaaaatttgtaatgtacgtta--ttatc

upper sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 2
TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaa----ttatttcactcttttttttaat-tataaaatatttcgtatttct-acttgttcttggtggtgttcgtgtgttgtgctttcaaagaaagttgatttatt
||||| ||||||||||| ||||| ||||||||||||||||| ||||| ||||| || | ||||||||||    ||| || | ||  | || | || |||  | ||     | |   | | |  ||||||||  ||||     | | | |||||        ||  ||| | 
TTCAATATCGCGAATCCGACCACAGGATGCCAGAAGAAGCTTGAGATTGACGATGACCAGAAACTgtaagtgcttacttgattcagtgttctcatatatggattaaaatatgtgattgaatcattcttggttttgtt-----gcttttctttctttctttctttctttct-

upper sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 2
TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattatttcactc------ttttttttaattataaaatatttcgtatttctacttgttcttggtggtgttcgtgtgttgtgctttcaaagaaagttgatttatt
||||| ||||| ||||| || || ||||| ||||||||||||||||| || ||||||| ||||||||||   ||  | |       ||||||||  ||   |    ||| ||   |       |  | |    | || ||   |  || |||      | |||  |||   
TTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTgtaagctttcaaattcccacgtttttttttcttcctatgcgttttgttgctgagaaaatgatagaaattattagttaatgttgtttt------aggttttttttcc

upper sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S31_322V6.1 (Physcomitrella patens), 5'ss of exon 2
TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattatttcactcttttttttaattataaaatatttcgtatttctacttgttcttggtggtgttcgtgtgttgtgctttcaaagaaagttgatttatt---
 |||| ||||| ||||||||||| || |||||||||||| |||||||||| |||||    || |||| | || | |     |  | ||  |   ||  |     |   ||    ||||| ||    | || ||      || |    | |  | | |    |  |   
CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtgccgcaatgctgtttgtc--aatgtgccgtgggcttaatgttgtt-ttataagggtccggtcacagtacgagaatattagggtttagtgctggt

upper sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 1
------TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattatttcactcttttttttaattataaaatatttcgtatttctacttgttcttggtggtgttcgtgtgttgtgctttcaaagaaagttgatttatt
       |||||||||| ||||||||||| ||||| ||||||||| |||| || |||||||||| ||| ||||||   | || ||    | | |    ||  |||     ||  || |  |   | || |||  |                                    
ATGAAGCTCAACATCGCCAATCCCACCACGGGATGTCAGAAGAAGGTCGACATTGACGACGATCAGAAGCTgtaagcttgtcgcttggatctctgg--atggaatg----gtgattttgttctcttttcgtgcag------------------------------------

upper sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ26393 (Selaginella moellendorffii), 5'ss of exon 1
-----------------------------------TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattatttcactcttttttttaattataaaatatttcgtatttctacttgttcttggtggtgttcgtgtgttgtgctttcaaagaaagttgatttatt
                                    |||||||||| ||||||||||| ||||| ||||||||| |||| || |||||||||| ||| ||||||   | || ||    | | |    ||  |||     ||  || |  |   | || |||  |                                    
CCTAGAGGAGGAAGGAGAGGCGCAGCGCGATGAAGCTCAACATCGCCAATCCCACCACGGGATGTCAGAAGAAGGTCGACATTGACGACGATCAGAAGCTgtaagcttgtcgcttggatctctgg--atggaatg----gtgattttgttctcttttcgtgcag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306899|gb|FK002621.1|FK002621
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|207706975|gb|GD689035.1|GD689035
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|26058968|gb|CA801882.1|CA801882
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|254318039|gb|GR832207.1|GR832207
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|298165755|gb|HO008726.1|HO008726
EST:     CCCACCATTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCCCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|5753653|gb|AI960940.1|AI960940
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|193517839|gb|FK473058.1|FK473058
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|4436991|gb|AI522856.1|AI522856
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|151413141|gb|EV282949.1|EV282949
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|209703578|gb|BW678280.1|BW678280
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|193398689|gb|FK361699.1|FK361699
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|192332922|gb|FK025019.1|FK025019
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|192333814|gb|FK025075.1|FK025075
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|192319434|gb|FK005874.1|FK005874
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|16106410|gb|BI894150.1|BI894150
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|151396097|gb|EV265974.1|EV265974
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|5605874|gb|AI899972.1|AI899972
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|213594190|gb|DB963787.1|DB963787
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|213597920|gb|DB958301.1|DB958301
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|192319433|gb|FK005873.1|FK005873
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|298171428|gb|HO016460.1|HO016460
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|298180050|gb|HO025265.1|HO025265
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|213603401|gb|DB970470.1|DB970470
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|192327797|gb|FK022398.1|FK022398
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|151412215|gb|EV282027.1|EV282027
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGACCGACGACGATCTGAAACT                         ACGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|193458142|gb|FK422482.1|FK422482
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|213607341|gb|DB957149.1|DB957149
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|151413002|gb|EV282810.1|EV282810
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|209714918|gb|BW682083.1|BW682083
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|298195035|gb|HO043563.1|HO043563
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|192332466|gb|FK024227.1|FK024227
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCCCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: gi|298172900|gb|HO019884.1|HO019884
EST:     CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT                         GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattatttcactcttttttttaattataaaatatttcgtatttctacttgttcttggtggtgttcgtgtgttgtgctttcaaagaaagttgatttatt

- - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaagaaa