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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCTCTGTGGTTATGGTTCTCATTGGGGTGCTCCGTTATTTTGTTTCTAAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaacctttgttcattagttgcttatgtggctggggttttatttttcctcttaatttgatatctaagtgatgttaatcaattcag

Basic information

species Glycine max
transcript GLYMA08G44410.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306569|gb|FG997239.1|FG997239
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|192312658|gb|FK004346.1|FK004346
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|193464599|gb|FK429699.1|FK429699
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|208254200|gb|GE051670.1|GE051670
EST:     AAACCCCTGACGCC-AAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|7042339|gb|AW472233.1|AW472233
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|192312657|gb|FK004345.1|FK004345
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|192323021|gb|FK016752.1|FK016752
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|192294522|gb|FG987451.1|FG987451
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGTTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|6913352|gb|AW394882.1|AW394882
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATGGTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|19053064|gb|BM731731.1|BM731731
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|17023264|gb|BM094298.1|BM094298
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|7588400|gb|AW704196.1|AW704196
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|298181915|gb|HO026090.1|HO026090
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATCTACGTGCTGCAGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTCTCTGTGGTTATGGTTCTCATTGGGGTGCTCCGTTATTTTGTTTCTAAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaacctttgttcattagttgcttatgtggctggggttttatttttcctcttaatttgatatctaagtgatgttaatcaattcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG