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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAAGAGAAGAGGTGGCCCAGGAGGTCTCACCAAAATCTGTGGTGTTTCGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGTCGAGGACTGAGgtttgtaccgatatttttgaagcttgttgtttgcttaatgcataattttgatatagtttccagcgagatttctaaaatgtggagtaactgtggttttag

Basic information

species Glycine max
transcript GLYMA08G43590.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G43590.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os08g39310.1 (Oryza sativa), 5'ss of exon 2
GGTGAAGAGAAGAGGTGGCCCAGGAGGTCTCACCAAAATCTGTGGTGTTTCGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGTCGAGGACTGAGgtttgtaccgata-tttttgaagcttgttgtttgcttaatgcataattttgatatagtttccagcgagatttctaaaatgtggagtaactgtggttttag
 || |||||||||||||| ||||| || || | |||| ||||||||||||| ||||| || || |  ||||||||  | ||| |  || | || |||||||||||| | | |   |       || ||   ||   |  |   ||| | | | ||  | |     || |     |   ||||    |||||  |      
AGTAAAGAGAAGAGGTGGTCCAGGTGGGCTAAACAAAGTCTGTGGTGTTTCTCCTGAGCTGCAAGCTATTGTTGGTGAACCAACCATGGCTAGAACTGAGgtttgttctgctggctcacctctctagtgaattatcttgtat-taactattacatcatgt---atgaaaccctgacgttgtgactcaactgcag------

upper sequence: GLYMA08G43590.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0090g01460.t01 (Vitis vinifera), 5'ss of exon 2
GGTGAAGAGAAGAGGTGGCCCAGGAGGTCTCACCAAAATCTGTGGTGTTTCGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGTCGAGGACTGAGgtttgtaccg---------atatttttgaagcttgtt-gtttgcttaatgcataattttgatatagtttccagcgagatttctaaaatgtggagtaactgtggttttag
    || ||||||||||| ||||| ||||| | |||| | || |||||||| ||||||||||||  ||||||||||||||||||  || | ||||| ||||||   |            ||||  || | | ||||| |   | || ||      |  | ||||  ||  || | | ||||| || ||||   ||  | |         
AACTAAAAGAAGAGGTGGTCCAGGGGGTCTAAACAAAGTTTGCGGTGTTTCACCTGAACTTCAGACCATTGTTGGCCAGCCAGCGCTGCCAAGGACCGAGgttcagattcgtaaaagatatatccttaacgattgtttgccagttttatatcatttcctaatattattggcatcta-atttccaatatgtttggtt-cag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208320218|gb|GE122919.1|GE122919
EST:     CGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGTCGAGGACTGAG                         ATTGTGAAGCAACTGTGGGCTTACATAAGGAAGAACAATCTCCAAGATCCC
genomic: CGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGTCGAGGACTGAGgtttgtaccg ... gtggttttagATTGTGAAGCAACTGTGGGCTTACATAAGGAAGAACAATCTCCAAGATCCC
EST: gi|33388029|gb|CA851236.1|CA851236
EST:     CGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGTCGAGGACTGAG                         ATTGTGAAGCAACTGTGGGCTTACATAAGGAAGAACAATCTCCAAGATCCC
genomic: CGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGTCGAGGACTGAGgtttgtaccg ... gtggttttagATTGTGAAGCAACTGTGGGCTTACATAAGGAAGAACAATCTCCAAGATCCC
EST: gi|16996625|gb|BM085997.1|BM085997
EST:     CGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGTCGAGGACTGAG                         ATTGTGAAGCAACTGTGGGCTTACATAAGGAAGAACAATCTCCAAGATCCC
genomic: CGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGTCGAGGACTGAGgtttgtaccg ... gtggttttagATTGTGAAGCAACTGTGGGCTTACATAAGGAAGAACAATCTCCAAGATCCC
EST: gi|9258697|gb|BE346844.1|BE346844
EST:     CGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGTCGAGGACTGAG                         ATTGTGAAGCAACTGTGGGCTTACATAAGGAAGAACAATCTCCAAGATCCC
genomic: CGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGTCGAGGACTGAGgtttgtaccg ... gtggttttagATTGTGAAGCAACTGTGGGCTTACATAAGGAAGAACAATCTCCAAGATCCC