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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGAAAAAAGCTTATGAATTATCAGTTCTGTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaactcacaaacccttcttaaattttttgttacccccaaatcttgaaggtaattaattggtttctctttggttttgtttattaatggctaatg...

Basic information

species Glycine max
transcript GLYMA08G42300.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G42300.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G58780.3 (Arabidopsis thaliana), 5'ss of exon 2
TGCTGAAAAAAGCTTATGAATTATCAGTTCTGTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaactcacaaacccttcttaaatt-ttttgttacccccaaatcttgaaggtaattaattggtttctctttggttttgtttattaatggctaatg-
| || || |||||||||||| | || ||  |||||||||| ||||||||||| ||  ||||||| || ||||||||| | |||||||| |||||||||||||    ||  |  ||      |  | |  || |||| |||     || |    ||| |  |   |    |  |         ||   ||| |  || ||   
TTCTCAAGAAAGCTTATGAACTCTCTGTCTTGTGTGATGCCGAAGTTGCCCTCGTCATCTTCTCCACTCGTGGCCGTCTCTATGAGTACGCCAACAACAGgtacgcttctcctactctatttcttgatcttgttttcttaattttaactaaacaagatcctagttcaaatgataacaaag--tggggattgagagccaagat

upper sequence: GLYMA08G42300.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0142g00360.t01 (Vitis vinifera), 5'ss of exon 2
TGCTGAAAAAAGCTTATGAATTATCAGTTCTGTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaactcacaaacccttcttaaattttttgttacccccaaatcttgaaggtaatta-attggtttctctttggttttgtttattaatggctaatg--
|||| ||||| || ||||||||||| ||  | |||||||| |||||||| ||  | |||||||| | |||||||||  | ||||| ||||| |||||||||||  |||  || |    |  | |              | | |  |  | | |       || | ||    || | |  | |||||    |||  |||||   
TGCTCAAAAAGGCCTATGAATTATCGGTCTTATGTGATGCAGAAGTTGCTCTCATCGTCTTCTCCAGCCGTGGCCGCCTCTATGAATATGCTAACAACAGgttaatttc-cttaatttctttccccctcccccccaccatctctcatccctaagatcctctacactgaaggctttata-tgttgtt-gcaaatctctaatttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193424007|gb|FK386328.1|FK386328
EST:     GTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAAGGGACCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCA
genomic: GTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTT-AGGG-CCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCA
EST: gi|208125774|gb|GD921574.1|GD921574
EST:     CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAAT
genomic: CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAAT
EST: gi|6665849|gb|AW277299.1|AW277299
EST:     CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
genomic: CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|298164275|gb|HO013920.1|HO013920
EST:     CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAGGGCCACTATTGAGAGGTACAAGAAGGCGAATGCTGCTGCTTCAAA
genomic: CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|193646978|gb|FK588873.1|FK588873
EST:     CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
genomic: CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|193359674|gb|FK323758.1|FK323758
EST:     GTCTTCTCAACCCGTGGTTCCGTTTTGTTATGAGTATGCCAACAACAG                         TGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
genomic: GTCTTCTCAACCCGTGG--CCG-TTTG-TATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|193693597|gb|FK634229.1|FK634229
EST:     CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
genomic: CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|193362757|gb|FK324405.1|FK324405
EST:     GTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
genomic: GTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|298181403|gb|HO022842.1|HO022842
EST:     CTTGTTGTCTTCTCGACCCGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
genomic: CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|6666384|gb|AW277843.1|AW277843
EST:     CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
genomic: CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|9985912|gb|BE659918.1|BE659918
EST:     CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
genomic: CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|193632718|gb|FK580566.1|FK580566
EST:     ATGAGTATGCCAACAACAG                         TGTTAGGGCCACCATTGAAAGGTACGAGAAGGCAAATGCTGCTGCTTCAAA
genomic: ATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|298186356|gb|HO036989.1|HO036989
EST:     CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAGGGCCACCATTGAAAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
genomic: CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|298187885|gb|HO031842.1|HO031842
EST:     CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
genomic: CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|298198572|gb|HO040111.1|HO040111
EST:     CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
genomic: CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|207782861|gb|GD754502.1|GD754502
EST:     CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
genomic: CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|207824891|gb|GD794699.1|GD794699
EST:     CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
genomic: CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|298181551|gb|HO025726.1|HO025726
EST:     CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAGGGCCACCATTGAAAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
genomic: CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|193437618|gb|FK399131.1|FK399131
EST:     GTCTTCTCAACCCGTGGCCGTTTGTATGAGTATTGCCAACAACAG                         TGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
genomic: GTCTTCTCAACCCGTGGCCGTTTGTATGAGTA-TGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|6454914|gb|AW185524.1|AW185524
EST:     CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
genomic: CTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
EST: gi|208212735|gb|GE013208.1|GE013208
EST:     CGTGGCCGTTTGTATGAGTATGCCAACAACAG                         TGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA
genomic: CGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaa ... tactttgcagTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAA