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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCAGAGAAAGAATTCAGGGTGGAAGTAGAGGCTATTGGCCATGTTAGACATAAAAATCTTGTACGATTACTTGGTTATTGCGTAGAAGGGGTTCACAGgtaaacttggtgttcttaatgcatcaaaatatcaccaatgcatatttcccttctatactcaatcacattgcaaactttattttgtgatagatgtgttacttttctgtcaaaaatttgaacagaacatcttttccttgttatatagttctttttcctttattatagatttggttgccgtctgatttgcag

Basic information

species Glycine max
transcript GLYMA08G42170.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G42170.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os10g35450.1 (Oryza sativa), 5'ss of exon 3
AAGCAGAGAAAGAATTCAGGGTGGAAGTAGAGGCTATTGGCCATGTTAGACATAAAAATCTTGTACGATTACTTGGTTATTGCGTAGAAGGGGTTCACAGgtaaacttggtgttcttaatgcatcaaaatatcaccaatgcatatttcccttctatactcaat--cacattgcaaactt-tattttgtgatagatgtgttacttttctgtcaaaaatttgaacagaacatcttttccttgttatatagttctttttcctttattatagatttggttgccgtctgatttgcag
| ||||| || || |||||||| ||||| |||||||||||||| || || ||||| |||||||| ||  | || || ||||| || || ||  | ||||||||||      | | || ||  ||||     |  |  ||| ||   |  ||| | |    | |  ||||||    ||||  ||   |   |||   || |  |  |||                                                                                    
AGGCAGAAAAGGAGTTCAGGGTTGAAGTTGAGGCTATTGGCCACGTCAGGCATAAGAATCTTGTCCGCCTTCTAGGATATTGTGTTGAGGGAATCCACAGgtaaa------gctatttatcaatcac--ctttgctgatggatggctagcttttgtttctactggcacattatttacttgcatagggatgtaggattgctcttggtct------------------------------------------------------------------------------------

upper sequence: GLYMA08G42170.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G017386_T02 (Zea mays), 5'ss of exon 4
AAGCAGAGAAAGAATTCAGGGTGGAAGTAGAGGCTATTGGCCATGTTAGACATAAAAATCTTGTACGATTACTTGGTTATTGCGTAGAAGGGGTTCACAGgtaaacttggtgttcttaatgcatcaaaatatcaccaatgcatatttccc--ttctatactcaatcacattgcaaa-ctttattttgtgatagatgtgttacttttctgtcaaaaatttgaacagaacatcttttccttgttatatagttctttttcctttattatagatttggttgccgtctgatttgcag
| ||||| ||||||||||| |||||||| |||||||||||||||||  ||||||| ||| | || ||  |  | || ||||| || || || ||  |||||||   |          || |||| || |  |     |  ||| | |  |  |    |   |||| |  |   ||  | | |   | || ||       || |                                                                                         
AGGCAGAAAAAGAATTCAGAGTGGAAGTTGAGGCTATTGGCCATGTCCGACATAAGAATTTGGTTCGGCTGTTGGGATATTGTGTTGAGGGCGTAAACAGgtatgttctac---tgaaaggcatgaatagcttgttcaaccatttctttcagtgacgtgtgcaattaggtaagaattcctaaaagtatggtaacctgaatatt-----------------------------------------------------------------------------------------

upper sequence: GLYMA08G42170.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 4
AAGCAGAGAAAGAATTCAGGGTGGAAGTAGAGGCTATTGGCCATGTTAGACATAAAAATCTTGTACGATTACTTGGTTATTGCGTAGAAGGGGTTCACAGgtaaacttggtg---ttcttaatg-catcaaaatatcaccaatgcatatttcccttctatactcaatcacattgcaaactttattttgtgatagatgtgttacttttctgtcaaaaatttgaacagaacatcttttccttgttatatagttctttttcctttattatagatttggttgccgtctgatttgcag---------
| ||||| ||||| |||||||| ||||| |||||||| ||||||||| | |||||||||||||| ||| |  | || |||||| ||||||| ||||||||||||  || ||    || ||| ||   |   ||| |     || | ||||    |   ||  |  ||   |||    | | | | |||| || ||||   |||||||  ||  ||||    |  |      |  ||| ||   |      ||  | |  |||      ||| |||||     || |||              
AGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGTTCGGCATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAGgtaagatttgttcactttttattgatgtggtaatttatttcattcctattcatttggcatgttggatgttatt----attatttattgtcat-gatgaagtactttttcgttgaaaaacaaagtacttttccaattcttttgcaatcttgtcgatctgatttgcctgggatgtggttatgtacttattattctttaatatag