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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTCTCCAGCAATTCCAGCTATGACAAAAACTTTGCTTGAGGATGTCAAGAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatatcgtgttatgtatatagttttagtttcatataatcaaggtagaagtgcagattagcaatctgaagtgacttagtccctattaaccttttaa...

Basic information

species Glycine max
transcript GLYMA08G41460.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G41460.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0009g03740.t01 (Vitis vinifera), 5'ss of exon 1
CGTTCTCCAGCAATTCCAGCTATGACAAAAACTTTGCTTGAGGATGTCAAGAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatatcgtgttatgtatatagttttagtttcatataatcaaggtagaagtgcagattagcaatctgaagtgact-tagtccctattaaccttttaa----
||| ||||| ||||||||||  |||| |||    | ||||||||||| |||||||| |||||||| ||||||||||||||||||||||| || || || ||||  |  ||     ||    | |  |||    |||| | |    |   |  ||    | ||     |   |  |  || | |   |  || |  |||  |    
CGTGCTCCACCAATTCCAGCATTGACCAAAGACCTTCTTGAGGATGTTAAGAAGATCTTCAAGACAACTACTGGAACCCCATTTCTCATTCCCACCACAGgtac-tgcatt-cactaacagtctgctttc---ttcagaaatcttaatcatcaggatggtttgaagcttccatttctctgtggcatcctttgatatttgcatgca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20207865|gb|BQ133954.1|BQ133954
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|12691062|gb|BG157398.1|BG157398
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGNGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|15200028|gb|BI424133.1|BI424133
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|209705721|gb|BW656714.1|BW656714
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|8669771|gb|BE190878.1|BE190878
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|120532515|gb|EH260648.1|EH260648
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|120533410|gb|EH261543.1|EH261543
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|209712666|gb|BW684596.1|BW684596
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|19347345|gb|BM892225.1|BM892225
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|17518805|gb|BM187847.1|BM187847
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|13125479|gb|BG316049.1|BG316049
EST:     GATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACT-                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|10844636|gb|BF067806.1|BF067806
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTNGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|213587992|gb|DB957451.1|DB957451
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|120532280|gb|EH260413.1|EH260413
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|120529049|gb|EH257183.1|EH257183
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|120533237|gb|EH261370.1|EH261370
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|9258033|gb|BE346180.1|BE346180
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|13125724|gb|BG316294.1|BG316294
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|213610849|gb|DB963179.1|DB963179
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|12689022|gb|BG155367.1|BG155367
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|22541902|gb|BU091745.1|BU091745
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGNGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|213595355|gb|DB962379.1|DB962379
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|10847001|gb|BF071458.1|BF071458
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGNGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|11687898|gb|BF595574.1|BF595574
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|20812844|gb|BQ297322.1|BQ297322
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|10232767|gb|BE801655.1|BE801655
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|151400838|gb|EV270652.1|EV270652
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|120533611|gb|EH261744.1|EH261744
EST:     GAAGA-TTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|192296902|gb|FG991928.1|FG991928
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|192304638|gb|FG998724.1|FG998724
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|23064111|gb|BU578884.1|BU578884
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|7283594|gb|AW596200.1|AW596200
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|120532807|gb|EH260940.1|EH260940
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|10844488|gb|BF067747.1|BF067747
EST:     ATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: ATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|120532767|gb|EH260900.1|EH260900
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|20814898|gb|BQ299376.1|BQ299376
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|213600415|gb|DB970309.1|DB970309
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|17519658|gb|BM188700.1|BM188700
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|15285343|gb|BI469234.1|BI469234
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|17518589|gb|BM187631.1|BM187631
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|9258027|gb|BE346150.1|BE346150
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGNGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: gi|8669722|gb|BE190829.1|BE190829
EST:     GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTG                         GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGgtatatatat ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC