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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTGgtaaggttttatttatttttttatttgtctttgaagtatatttttttgtttaaatttgactatggaaaatgttttgtttttgttttcagatattcgttat...

Basic information

species Glycine max
transcript GLYMA08G40800.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40800.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G150616_T01 (Zea mays), 5'ss of exon 2
ATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTGgtaaggttttatttatttttttatttgtctttgaagtatatttttttgtttaaatttgactat--ggaaaatgttttgtttttgttttcagatattcgttat
|||| |||| |||||| || |||| |||||||||||||||| |||| || ||||| |||| ||| || |||||   ||   |   |||        |   |     | || ||  | ||   |     ||   ||    || |||||  || | | | ||      | | 
ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgcttcgctccgtttcggaacacccc-gtttcctcttgttcagcttcggtccttttactagggcgttgctttgtgctt-tctccggactggaatgaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298176826|gb|HO023299.1|HO023299
EST:     ATCAGAATGACCACAAGTTCACCATCACCACTTATACTTCCACTGGAGTG                         GAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
genomic: ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTGgtaaggtttt ... atatattcagGAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
EST: gi|9986940|gb|BE661048.1|BE661048
EST:     ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTG                         GAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
genomic: ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTGgtaaggtttt ... atatattcagGAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
EST: gi|298184314|gb|HO029527.1|HO029527
EST:     ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTG                         GAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
genomic: ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTGgtaaggtttt ... atatattcagGAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
EST: gi|6455452|gb|AW186135.1|AW186135
EST:     ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTG                         GAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
genomic: ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTGgtaaggtttt ... atatattcagGAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
EST: gi|213603299|gb|DB966586.1|DB966586
EST:     ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTG                         GAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
genomic: ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTGgtaaggtttt ... atatattcagGAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
EST: gi|209717731|gb|BW679736.1|BW679736
EST:     ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTG                         GAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
genomic: ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTGgtaaggtttt ... atatattcagGAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
EST: gi|7284237|gb|AW596833.1|AW596833
EST:     ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTG                         GAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
genomic: ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTGgtaaggtttt ... atatattcagGAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
EST: gi|8827074|gb|BE210804.1|BE210804
EST:     ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTG                         GAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
genomic: ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTGgtaaggtttt ... atatattcagGAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
EST: gi|151398768|gb|EV268639.1|EV268639
EST:     ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTG                         GAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
genomic: ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTGgtaaggtttt ... atatattcagGAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
EST: gi|151395734|gb|EV265611.1|EV265611
EST:     ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTG                         GAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
genomic: ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTGgtaaggtttt ... atatattcagGAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
EST: gi|298165729|gb|HO008700.1|HO008700
EST:     ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTG                         GAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC
genomic: ATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACTGGAGTGgtaaggtttt ... atatattcagGAAATCACTTCAACTGGAGTCAGGAAAGGTGAAATATATTTGGCCGATGTC