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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttctctctctctcccttttccccaattttttgtttatttttaaaattatttgttaaccgtttgtttttctttgtgtgcgtgtgtgtgtgcag

Basic information

species Glycine max
transcript GLYMA08G40200.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40200.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G121942_T03 (Zea mays), 5'ss of exon 3
GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttctctctctctcccttttccccaattttttgtttatttttaaaattatttgttaaccgtttgtttttctttgtgtgcgtgtgtgtgtgcag
|| || |||||||| ||||| || || |||||||||||||| ||||||||||||||||| || || ||||| ||||||   ||||||| ||| ||    ||| |   | |  |  ||  |  |  | | || ||| |    |   |      || | |||| || | | |              
GCTAGCGATAGGTTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATTgtaagtatcctgttctttt--tgtaacaaaagatgctactaaattataagaca--tcaatgcttaattttgtttccttatttacag------------

upper sequence: GLYMA08G40200.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G121942_T01 (Zea mays), 5'ss of exon 3
GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttctctctctctcccttttccccaattttttgtttatttttaaaattatttgttaaccgtttgtttttctttgtgtgcgtgtgtgtgtgcag
      |||||||| ||||| || || |||||||||||||| ||||||||||||||||| || || ||||| ||||||   ||||||| ||| ||    ||| |   | |  |  ||  |  |  | | || ||| |    |   |      || | |||| || | | |              
-----CGATAGGTTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATTgtaagtatcctgttctttt--tgtaacaaaagatgctactaaattataagaca--tcaatgcttaattttgtttccttatttacag------------

upper sequence: GLYMA08G40200.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G106574_T01 (Zea mays), 5'ss of exon 3
GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttctctctctctcccttttccccaattttttgtttatttttaaaattatttgttaaccgtttgtttttctttgtgtgcgtgtgtgtgtgcag
|| || ||||| || ||||| || || |||||||||||||| ||||||||||||||||| || || ||||| ||||||   ||||||| |||  |    ||| |   |        || ||       | | | | ||||    ||||   |||  || | |                      
GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATTgtaagtaccctattctttttgtaacaaatcatgttactgaattatatgacattaccgcttaatgttttccttatttacag------------------

upper sequence: GLYMA08G40200.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G23325.1 (Arabidopsis thaliana), 5'ss of exon 2
GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttctctctctctcccttttccccaattttttgtttatttttaaaattatttgttaaccgtttgtttttctttgtgtgcgtgtgtgtgtgcag
|| ||||||||||||||||| ||||| |||||||||||||| ||||| || |||||||| || || ||||| ||||||| |||||||| ||| | | || || |   |||      ||||||       ||  |||||| |    | |  |    |     ||||  ||  | |||||  |   
GCAAGTGATAGGTTTAACATAAATTCTCAGCTTGAGCATCTTCAAGCTAAGTATGTTGGTACAGGTCATGCAGATTTGAGCAGATTgtaagtatttttcactttttgtttg----gatttttca--ggattccaaaattgtgaacttattgaaaat-----tttgaatgtttttgtgttag---

upper sequence: GLYMA08G40200.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G14342.1 (Arabidopsis thaliana), 5'ss of exon 2
GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttctctctctctcccttttccccaattttttgtttatttttaaaattatttgttaaccgtttgtttttctttgtgtgcgtgtgtgtgtgcag
|| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| || ||||| |||||||  ||||||||||||||| |   | |   | |||   | |||| | |  ||| ||   |||   |  |||    | |  ||  |||   || ||            
GCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAATATGTTGGAACCGGTCATGCTGATTTGAGTAGATTgtgagtttcttttgattttagtgttcaa-atttttatatgcattgtttttattggctactaatttgtggaattggtttaaatg-gtacag--------

upper sequence: GLYMA08G40200.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0049g01230.t01 (Vitis vinifera), 5'ss of exon 2
GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttctctctctctcccttttccccaattttttgtttatttttaaaattatttgttaaccgtttgtttttctttgtgtgcgtgtgtgtgtgcag
||||||||||||||||| || || ||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||| ||||||| |||  |    | | |    |||      |  |   ||||||| ||   || | | |      |||| | || | |||| ||              
GCCAGTGATAGGTTTAATATTAACTCCCAGCTTGAGCATCTGCAAGCAAAATATGTTGGAACTGGTCATGCTGACTTGAATAGATTgtaagtaacctattattttagatttggttg-tcatcattttatttataggtttttctttcttagatttgatgttttgtgtgggcag------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14196138|gb|BE820012.2|BE820012
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttct ... gtgtgtgcagTGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
EST: gi|120496264|gb|EH224431.1|EH224431
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttct ... gtgtgtgcagTGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
EST: gi|151399159|gb|EV269030.1|EV269030
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttct ... gtgtgtgcagTGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
EST: gi|13563498|gb|BG551718.1|BG551718
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttct ... gtgtgtgcagTGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
EST: gi|15816158|gb|BI788433.1|BI788433
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttct ... gtgtgtgcagTGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
EST: gi|7234170|gb|AW569510.1|AW569510
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttct ... gtgtgtgcagTGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
EST: gi|120529548|gb|EH257682.1|EH257682
EST:     CCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
genomic: CCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttct ... gtgtgtgcagTGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
EST: gi|27423463|gb|CA934983.1|CA934983
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttct ... gtgtgtgcagTGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
EST: gi|38192832|gb|CF922038.1|CF922038
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttct ... gtgtgtgcagTGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
EST: gi|120529853|gb|EH257987.1|EH257987
EST:     CCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
genomic: CCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttct ... gtgtgtgcagTGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
EST: gi|208297831|gb|GE090974.1|GE090974
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttct ... gtgtgtgcagTGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
EST: gi|58018538|gb|CX705280.1|CX705280
EST:     AGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
genomic: AGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttct ... gtgtgtgcagTGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
EST: gi|120533322|gb|EH261455.1|EH261455
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttct ... gtgtgtgcagTGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
EST: gi|9259379|gb|BE347526.1|BE347526
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttct ... gtgtgtgcagTGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
EST: gi|209703683|gb|BW670673.1|BW670673
EST:     ATGTTGGAACTGGCCATGCCGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
genomic: ATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttct ... gtgtgtgcagTGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
EST: gi|6746775|gb|AW317231.1|AW317231
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttct ... gtgtgtgcagTGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
EST: gi|213601870|gb|DB980222.1|DB980222
EST:     CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT                         TGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA
genomic: CATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATTgtgagtttct ... gtgtgtgcagTGAGTGGGCAGTGAACATTCAACGAGATAGCTATGCATCATATATTGGACA