Sequence
atgc intronic sequence ATGC exonic sequenceCTCCAGGATTTCCGGAGAAGAGAATGGGTTACCTTGGCCTTATGTTGCTTCTCGATGAAAGACAAGAGGTTCTAATGTTGGTCACCAATTCTTTGAAACAgtatccaaattcatgtcaatgtttcatttgtttttgtgttccttaatttttagattccattttacaaatatgctagggagctagcaataatggtgatgggttataaaaaccttagctaagtcacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G39930.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G60070.1 (Arabidopsis thaliana), 5'ss of exon 2
CTCCAGGATTTCCGGAGAAGAGAATGGGTTACCTTGGCCTTATGTTGCTTCTCGATGAAAGACAAGAGGTTCTAATGTTGGTCACCAATTCTTTGAAACAgtatccaaattcatgtcaatgtttcatttgtttttgtgttccttaatttttagattccattttacaaatatgctagggagctagcaataatggtgatgggttataaaaaccttagctaagtcacag
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CTCCTGGATTTCCTGAGAAGAGGATTGGTTATCTTGGATTAATGTTGCTTCTTGATGAAAGGCAAGAAGTATTAATGCTTGTCACCAACTCGCTGAAGCAgtatcc---tttatggtgttaatt--tttgattttg-attccctagtagtgttttaactttttgctggcatcttcgc--acaaatttttaagttcatc--ttgtgagaaccttgacttacgtctag
upper sequence: GLYMA08G39930.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 2
CTCCAGGATTTCCGGAGAAGAGAATGGGTTACCTTGGCCTTATGTTGCTTCTCGATGAAAGACAAGAGGTTCTAATGTTGGTCACCAATTCTTTGAAACAgtatccaaattcatgtcaatgtttcatttgtttttgtgttccttaatttttagattccattttacaaatatgctagggagctagcaataatggtgatgggttataaaaaccttagctaagtcacag
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CGGCTGGATTTCCGGAAAAGAGAATAGGATATCTTGGCCTCATGTTGCTTCTTGATGAAAGGCAAGAAGTTCTTATGTTGGTTACAAACTCATTAAAACAgtatccaattctaagt--aggttttatttttcatttgcttgactaatttc-------------------agaccaggcagctggtccttgtctttac---caagataaactttatcactagtac--
upper sequence: GLYMA08G39930.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S211_68V6.1 (Physcomitrella patens), 5'ss of exon 2
CTCCAGGATTTCCGGAGAAGAGAATGGGTTACCTTGGCCTTATGTTGCTTCTCGATGAAAGACAAGAGGTTCTAATGTTGGTCACCAATTCTTTGAAACAgtatccaaattcatgtcaatgtttcatttgtttttgtgttcct-taatttttagattccattttacaaatatgctagggagctagcaataatggtgatgggttataaaaaccttagctaagtcacag
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CAGGAAGCTTCCCGGAGAAAAGAATTGGTTACTTAGGTCTTATGTTGCTTCTTGACGAGCGTCAGGAGGTGCTGATGTTAGTGACGAATTCTTTGAAAAAgtatg-----tcaccttttctttccatctgtagttgagttaatgtgacggccatctttc--tttactagcgtgtggcgtgacgatgtgttctcgtacgaagaagcac--------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207819262|gb|GD792724.1|GD792724EST: CTCGATGAAAGACAAGAGGTTCTAATGTTGGTCACCAATTCTTTGAAACA AGATCTTAATCACACAAATCAATATATAGTGGGACTTGCTCTTTGTGCTTT
genomic: CTCGATGAAAGACAAGAGGTTCTAATGTTGGTCACCAATTCTTTGAAACAgtatccaaat ... taagtcacagAGATCTTAATCACACAAATCAATATATAGTGGGACTTGCTCTTTGTGCTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCCAGGATTTCCGGAGAAGAGAATGGGTTACCTTGGCCTTATGTTGCTTCTCGATGAAAGACAAGAGGTTCTAATGTTGGTCACCAATTCTTTGAAACAgtatccaaattcatgtcaatgtttcatttgtttttgtgttccttaatttttagattccattttacaaatatgctagggagctagcaataatggtgatgggttataaaaaccttagctaagtcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG