1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CATGGTGAGAGCTCAAACCAGCCACCCTTTGGATCCACTAACTGCTGCTGAAATATCAGTAGCTGTAGCGACCGTTCGAGCAGCTGGGGCAACACCTGAGgtacataactcattttcctccttggtatacattttgcttggctatactaccaagtaatggcaaaactgtgctagacattgcccatcaagctataacctctatattactgtttctgcatgttgatgaagttctttgatcatcttag
species | Glycine max |
transcript | GLYMA08G38990.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTTCGAGCAGCTGGGGCAACACCTGAG GTGAGGGATGGCATGCGCTTTATTGAAGTAGACCTGGTAGAACCAGAAAAGEST: gi|192327405|gb|FK019592.1|FK019592
genomic: GTTCGAGCAGCTGGGGCAACACCTGAGgtacataact ... atcatcttagGTGAGGGATGGCATGCGCTTTATTGAAGTAGACCTGGTAGAACCAGAAAAG
EST: AAATATCAGTAGCTGTAGCGACCGTTCGAGCAGCTGGGGCAACACCTGAG GTGAGGGATGGCATGCGCTTTATTGAAGTAGACCTGGTAGAACCAGAAAAGEST: gi|207713084|gb|GD692966.1|GD692966
genomic: AAATATCAGTAGCTGTAGCGACCGTTCGAGCAGCTGGGGCAACACCTGAGgtacataact ... atcatcttagGTGAGGGATGGCATGCGCTTTATTGAAGTAGACCTGGTAGAACCAGAAAAG
EST: AAATATCAGTAGCTGTAGCGACCGTTCGAGCAGCTGGGGCAACACCTGAG GTGAGGGATGGCATGCGCTTTATTGAAGTAGACCTGGTAGAACCAGAAAAGEST: gi|213615152|gb|DB963364.1|DB963364
genomic: AAATATCAGTAGCTGTAGCGACCGTTCGAGCAGCTGGGGCAACACCTGAGgtacataact ... atcatcttagGTGAGGGATGGCATGCGCTTTATTGAAGTAGACCTGGTAGAACCAGAAAAG
EST: AAATATCAGTAGCTGTAGCGACCGTTCGAGCAGCTGGGGCAACACCTGAG GTGAGGGATGGCATGCGCTTTATTGAAGTAGACCTGGTAGAACCAGAAAAG
genomic: AAATATCAGTAGCTGTAGCGACCGTTCGAGCAGCTGGGGCAACACCTGAGgtacataact ... atcatcttagGTGAGGGATGGCATGCGCTTTATTGAAGTAGACCTGGTAGAACCAGAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGGTGAGAGCTCAAACCAGCCACCCTTTGGATCCACTAACTGCTGCTGAAATATCAGTAGCTGTAGCGACCGTTCGAGCAGCTGGGGCAACACCTGAGgtacataactcattttcctccttggtatacattttgcttggctatactaccaagtaatggcaaaactgtgctagacattgcccatcaagctataacctctatattactgtttctgcatgttgatgaagttctttgatcatcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG