1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCTCAAGGAAGTTCCGTGAAATCATTCAACACTATAATCTTGAAATTCCCAAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGgtaggtttccacatcaaagttatggttttgttaaattggtattttgatttgatactttccaacaaaaagcctttgaatgctgtaaataaaatatatggac...
species | Glycine max |
transcript | GLYMA08G33830.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTG ATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAEST: gi|298193020|gb|HO033465.1|HO033465
genomic: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGgtaggtttcc ... tttcttatagATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCA
EST: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTG ATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAEST: gi|298198185|gb|HO039724.1|HO039724
genomic: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGgtaggtttcc ... tttcttatagATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCA
EST: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTG ATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAEST: gi|298170086|gb|HO018710.1|HO018710
genomic: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGgtaggtttcc ... tttcttatagATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCA
EST: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTG ATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAEST: gi|298194650|gb|HO043122.1|HO043122
genomic: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGgtaggtttcc ... tttcttatagATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCA
EST: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTG ATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAEST: gi|298163700|gb|HO012433.1|HO012433
genomic: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGgtaggtttcc ... tttcttatagATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCA
EST: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTG ATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGEST: gi|192305727|gb|FG995697.1|FG995697
genomic: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGgtaggtttcc ... tttcttatagATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAG
EST: GAAAATGCAAAGCCATATTTGAGCAGTTTG ATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAEST: gi|22523171|gb|BU081982.1|BU081982
genomic: GAAAATGCAAAGCCATATTTGAGCAGTTTGgtaggtttcc ... tttcttatagATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCA
EST: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTG ATGATGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAEST: gi|298169069|gb|HO020429.1|HO020429
genomic: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGgtaggtttcc ... tttcttatagATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCA
EST: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTG ATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCA
genomic: AAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGgtaggtttcc ... tttcttatagATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCAAGGAAGTTCCGTGAAATCATTCAACACTATAATCTTGAAATTCCCAAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGgtaggtttccacatcaaagttatggttttgttaaattggtattttgatttgatactttccaacaaaaagcctttgaatgctgtaaataaaatatatggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaaa