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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGCTTCAGGCAATTACTGCATACACTTTGCGGCTGAAAAGTCTAATCTCCAGAGAAATAGAGAAAATTGATGTTAGAGCCGATGCAGAGACCTTGAGgtatcatttatacatagtttttgttttttcatgttctgttggtgctcttattgatgcctctgtgaccataatatttgaattttggaccttctgtcattaa...

Basic information

species Glycine max
transcript GLYMA08G27740.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G27740.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G38880.1 (Arabidopsis thaliana), 5'ss of exon 2
AATTGCTTCAGGCAATTACTGCATACACTTTGCGGCTGAAAAGTCTAATCTCCAGAGAAATAGAGAAAATTGATGTTAGAGCCGATGCAGAGACCTTGAGgtatcatttatacatagtttttgttttttcatgttctgttg-gtgctcttattgatgcctc-tgtgaccataatatttgaattttggaccttctgtcattaa
   |||||||||| ||| ||||||||||||| ||  | || | ||| || |||||||| || ||||| |||||||| ||||| ||||| || |  || |||| |    |     |  || || |       | |  | ||| |  ||| |  |  |||    | ||        |  || |  |||  | | || |  ||  
TGCTGCTTCAGGCTATTGCTGCATACACTTTACGCATTAAGACTCTGATATCCAGAGAGATGGAGAAGATTGATGTCAGAGCAGATGCTGAAATGTTAAGgtgtgtcctgactttccttcttatgccactctttgttattgtgcactcctgattctgcagggtatggttcacccaaatgcaccttg--catgctatttttgc

upper sequence: GLYMA08G27740.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0083g00990.t01 (Vitis vinifera), 5'ss of exon 2
AATTGCTTCAGGCAATTACTGCATACACTTTGCGGCTGAAAAGTCTAATCTCCAGAGAAATAGAGAAAATTGATGTTAGAGCCGATGCAGAGACCTTGAGgtatcatttatacatagtttttgttttttcatgttctgttggt--gctcttattgatgcctctgtgaccataatatttgaattttgg-accttctgtcattaa
| || ||||||||||||||||||||||||||  ||||||||| ||||||  | ||||||||||||||||||||||||||||| ||||||||  |||||||||| | ||||||  |  || ||   |||  |||   ||||| |  ||| ||       | | |   ||  |  | ||    |  | | | |  | ||   || 
AGTTACTTCAGGCAATTACTGCATACACTTTAAGGCTGAAAACTCTAATTACAAGAGAAATAGAGAAAATTGATGTTAGAGCTGATGCAGAAGCCTTGAGgta-cttttatattttcttcttagctttg-atgccttgttgttttgcttttccccccacttttaacactttgctcttgctctactagtagcagcagttgata-