Sequence
atgc intronic sequence ATGC exonic sequenceATGCTTATGATCCACTCGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGTTGGACCCCAGATGGATATGTGgtaagtatagtttttttacaatatcacctattaatttgagaagcaaaccatctgttgtgcattatgcatggtgttgaaatgttttttgttccttttcttt...
Basic information
species | Glycine max |
transcript | GLYMA08G27560.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G27560.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g30260.1 (Oryza sativa), 5'ss of exon 2
ATGCTTATGATCCACTCGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGTTGGACCCCAGATGGATATGTGgtaagtatagtttttttacaatatcacctattaatttgagaagc--aaaccatctgt-tgtgcattatgcatggtgttgaaatgttttttgttccttttcttt
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AAGCATATGATCCTCTCGATCCAAATGGGAATATCACAATCAAGTGGGACATCACACAGTGGACCCCAGATGGCTATGTTgtaagttcactagattgtcagctttcaacataagctggggctctttgagcctttcatctaaaaaaagttcacgagatt-atgtgtctgaaactaccattta--
upper sequence: GLYMA08G27560.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0083g01160.t01 (Vitis vinifera), 5'ss of exon 2
ATGCTTATGATCCACTCGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGTTGGACCCCAGATGGATATGTGgtaagtatagtttttttacaatatcacctattaatttgagaag---caaaccatctgttgtgcattatgca--tggtgttgaaatgttttttgttccttttcttt
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AAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATATTATGAGCTGGACTCCAGATGGCTATGTTgtaagtacttgttcattatatacttcctaactaatataacaggggtcgactcagataatagtgatcttgtagttcatgcttgtgtatgttaagtttaggt-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151412694|gb|EV282506.1|EV282506EST: ATATCACAATCAAATGGGATATTATAAGTTGGACCCCAGATGGATATGTG GCTGTTGTTACGATGAACAACTTCCAACAATATCGTCATATCGCTTCACCT
genomic: ATATCACAATCAAATGGGATATTATAAGTTGGACCCCAGATGGATATGTGgtaagtatag ... gaatatacagGCTGTTGTTACGATGAACAACTTCCAACAATATCGTCATATCGCTTCACCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGCTTATGATCCACTCGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGTTGGACCCCAGATGGATATGTGgtaagtatagtttttttacaatatcacctattaatttgagaagcaaaccatctgttgtgcattatgcatggtgttgaaatgttttttgttccttttcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA