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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCTTTTTCCACTTCGATATTTTGAGCGTCATCTTGCTGAATCTATAAGGCCTGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGgttagtttcttttttttttcttctaattttcaatctgcaaaatctttggcatgtagtgtgttattcacacttggaacaaaacttaggtggttaattcatttgatcag

Basic information

species Glycine max
transcript GLYMA08G27080.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G27080.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G60080.1 (Arabidopsis thaliana), 5'ss of exon 2
CGCCTTTTTCCACTTCGATATTTTGAGCGTCATCTTGCTGAATCTATAAGGCCTGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGgt-tagtttcttt---tttttttcttctaattttca--atctgcaaaatctttggcatgtagtgtgttattcacacttggaacaaaacttaggtggttaattcatttgatcag
 |  | || || ||||| |  ||||||||||||||  |||||||| |  | |||||||| |||| |||||||||||||||||| || | | ||  ||||||| ||     |     ||  ||  || || |||| |  |  |  ||||| |      | ||||| |||  |     |||    |                             
AGAATCTTCCCTCTTCGTTTCTTTGAGCGTCATCTCTCTGAATCTCTTCGTCCTGATGGAAGACAACTTGGAAAAGCTAGAGACACCATTGTTAATCTTGgtataaacaatgaagattgattctttttagtttttatcaaattaaaaatgtcaactttatagtg-gtttcttgtgtttgttgtag----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120528814|gb|EH256948.1|EH256948
EST:     GCCTGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTG                         GTGCTGTTGCGTCTGCTAATGGGTCGGCTCTAGTGAAGATTGGATCAACT
genomic: GCCTGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGgttagtttct ... atttgatcagGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTAGTGAAGATTGGATCAACT
EST: gi|13252202|gb|BG363105.1|BG363105
EST:     GCCTGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTG                         GTGCTGTTGCGTCTGCTAATGGGTCGGCTCTAGTGAAGATTGGATCAACT
genomic: GCCTGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGgttagtttct ... atttgatcagGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTAGTGAAGATTGGATCAACT
EST: gi|15663161|gb|BI700532.1|BI700532
EST:     GCCTGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTG                         GTGCTGTTGCGTCTGCTAATGGGTCGGCTCTAGTGAAGATTGGATCAACT
genomic: GCCTGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGgttagtttct ... atttgatcagGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTAGTGAAGATTGGATCAACT
EST: gi|213613815|gb|DB961312.1|DB961312
EST:     GCCTGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTG                         GTGCTGTTGCGTCTGCTAATGGGTCGGCTCTAGTGAAGATTGGATCAACT
genomic: GCCTGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGgttagtttct ... atttgatcagGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTAGTGAAGATTGGATCAACT