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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGACTCAGCTCAGCCATAACGTTGCAAGATTCAAATTTGCCCTTCCTACTCCTTCTTCGGTATTGGGCCTTCCTGTTGGAAAAAACATACTTGCTAGgttaggaaaatatataccttatattgttctatatactgtagtatatttaacttatcccgttgaataaaaacatcataaattttacattaaaaaaatgagagagagagagagtataactgttatttgttaatgttaagcag

Basic information

species Glycine max
transcript GLYMA08G24510.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24510.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g59930.2 (Oryza sativa), 5'ss of exon 2
AGAAGACTCAGCTCAGCCATAACGTTGCAAGATTCAAATTTGCCCTTCCTACTCCTTCTTCGGTATTGGGCCTTCCTGTTGGAAAAAACATACTTGCTAGgttaggaaaatatataccttatattgttctatat--actgtagtatatttaacttatcccgttgaataaaaacat-cataaattttacattaaaaaaatgagagagagagagagtataactgttatttgttaatgttaagcag
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AAAAGAAGCAAATAAGTCATAACGTGGCCAGATTCAAATTTGCTCTTCCAACTCCAACCTCTGTATTGGGCCTTCCAATTGGTCAGCATATCAGTTGCAGgtttggat----tccgccttatgcctttctttatgaagtttgctacccttttttttttacataaattggaaaaatgtatgtgctattcttttag-------------------------------------------------