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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAAGCAAGACCTCGAGGCTGCGAAGAAGAAGAGAGCCGAGAGCCGCAAACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacacctttcttaccctaagtttgttttatttgcaatttttctctttcgtttctgaacctgttgtcgtgattataatag

Basic information

species Glycine max
transcript GLYMA08G23750.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213617680|gb|DB959348.1|DB959348
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|209713367|gb|BW653864.1|BW653864
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACCATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|254325882|gb|GR838763.1|GR838763
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|26046005|gb|CA783377.1|CA783377
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|254347507|gb|GR853756.1|GR853756
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|151408828|gb|EV278636.1|EV278636
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|213600867|gb|DB968831.1|DB968831
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|192299043|gb|FG992834.1|FG992834
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|298190099|gb|HO032220.1|HO032220
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|254325881|gb|GR838762.1|GR838762
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|21602015|gb|BQ612346.1|BQ612346
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|298186333|gb|HO036966.1|HO036966
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|298167477|gb|HO012740.1|HO012740
EST:     AACTCATCTACAACAGAGCTAAGCGGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAACTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|213614186|gb|DB956798.1|DB956798
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|151404152|gb|EV273962.1|EV273962
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|192294789|gb|FG987478.1|FG987478
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|193555077|gb|FK515074.1|FK515074
EST:     GTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGACCAAGCTGAAAGGTGGATTC
genomic: GTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|15285859|gb|BI469750.1|BI469750
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|193492448|gb|FK454858.1|FK454858
EST:     GTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGACCAAGCTGAAAGGTGGATTC
genomic: GTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|213604903|gb|DB956306.1|DB956306
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|192294006|gb|FG987175.1|FG987175
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|209700311|gb|BW664537.1|BW664537
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|298169215|gb|HO020575.1|HO020575
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|209705304|gb|BW667975.1|BW667975
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|192298153|gb|FG991673.1|FG991673
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|213598951|gb|DB964526.1|DB964526
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|8284696|gb|BE022238.1|BE022238
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|193470827|gb|FK436894.1|FK436894
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTT
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTT
EST: gi|192296243|gb|FG991569.1|FG991569
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|10845839|gb|BF068880.1|BF068880
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|15664210|gb|BI701581.1|BI701581
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|209705404|gb|BW678521.1|BW678521
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|209701110|gb|BW652638.1|BW652638
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|17023798|gb|BM094832.1|BM094832
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|14258689|gb|BG881597.1|BG881597
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|298176382|gb|HO023083.1|HO023083
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCT-AGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|9564858|gb|BE474367.1|BE474367
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
EST: gi|151404236|gb|EV274046.1|EV274046
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacaccttt ... attataatagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGAAGCAAGACCTCGAGGCTGCGAAGAAGAAGAGAGCCGAGAGCCGCAAACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacacctttcttaccctaagtttgttttatttgcaatttttctctttcgtttctgaacctgttgtcgtgattataatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG