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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGGAGCATCTCTTCAGCCAGTCTAACAAACCAAGCTGTGGTTTCTCATGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGgtattcttcattgttttttctgtgcagatattttactaaatttgcatttcatggtttgacatggttcttttgtaattaaactgaaatgaaaaaaaaatgg...

Basic information

species Glycine max
transcript GLYMA08G22620.5
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9565669|gb|BE475178.1|BE475178
EST:     TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACG                         GTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAAATAAAA-G
genomic: TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGgtattcttca ... ttggttgcagGTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAA-TAAAAAG
EST: gi|192297880|gb|FG988350.1|FG988350
EST:     TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACG                         TTGTAATTCTTTGGAATCAAACTCGGCAACGTTGGGTTGGAAATAAAAAGC
genomic: TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGgtattcttca ... ttggttgcagGTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGC
EST: gi|37995426|gb|CF807015.1|CF807015
EST:     TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACG                         GTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGC
genomic: TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGgtattcttca ... ttggttgcagGTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGC
EST: gi|15199752|gb|BI423992.1|BI423992
EST:     TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACG                         GTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGC
genomic: TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGgtattcttca ... ttggttgcagGTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGC
EST: gi|192324319|gb|FK018295.1|FK018295
EST:     TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACG                         GTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGC
genomic: TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGgtattcttca ... ttggttgcagGTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGC
EST: gi|37994146|gb|CF805892.1|CF805892
EST:     TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACG                         GTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGC
genomic: TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGgtattcttca ... ttggttgcagGTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGC
EST: gi|192297127|gb|FG988223.1|FG988223
EST:     TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACG                         GTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGC
genomic: TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGgtattcttca ... ttggttgcagGTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGC
EST: gi|151407728|gb|EV277543.1|EV277543
EST:     TGCTGGTTCCTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACG                         GTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGC
genomic: TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGgtattcttca ... ttggttgcagGTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGC
EST: gi|37995362|gb|CF806951.1|CF806951
EST:     TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACG                         GTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGC
genomic: TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGgtattcttca ... ttggttgcagGTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGC
EST: gi|193532006|gb|FK488872.1|FK488872
EST:     TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACG                         GTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAA-GC
genomic: TGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGgtattcttca ... ttggttgcagGTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGC