Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctctctttctcgattcaatcaaatgaatagtgtgtctccttactcttttctgtgtcctatttttagagtaaaaactggcggttttgttaataat...

Basic information

species Glycine max
transcript GLYMA08G22410.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298190828|gb|HO032949.1|HO032949
EST:     TGCCAATCGCTACTGGTTACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|192302311|gb|FG996649.1|FG996649
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATGGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|298175877|gb|HO015282.1|HO015282
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|6566901|gb|AW234533.1|AW234533
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTGCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|6724900|gb|AW309299.1|AW309299
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|10237010|gb|BE805898.1|BE805898
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|298163725|gb|HO012458.1|HO012458
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|192297284|gb|FG992393.1|FG992393
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|17518872|gb|BM187914.1|BM187914
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|192325877|gb|FK016554.1|FK016554
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGACACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|298179041|gb|HO024776.1|HO024776
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|15813798|gb|BI786073.1|BI786073
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|4396994|gb|AI495991.1|AI495991
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGG
EST: gi|14011794|gb|BG726716.1|BG726716
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|209715584|gb|BW674321.1|BW674321
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|192330663|gb|FK021968.1|FK021968
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|298198446|gb|HO039985.1|HO039985
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|16346699|gb|BI972294.1|BI972294
EST:     TGCCAATCGCTACTGGTCACGAGCGCTAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATATACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|10847095|gb|BF069862.1|BF069862
EST:     AGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: AGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|192297285|gb|FG992394.1|FG992394
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|192310382|gb|FK002262.1|FK002262
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|4290153|gb|AI438028.1|AI438028
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|11275029|gb|BF325353.1|BF325353
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|192302312|gb|FG996650.1|FG996650
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATGGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|15338027|gb|BI498683.1|BI498683
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|7590619|gb|AW706367.1|AW706367
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|26058026|gb|CA800940.1|CA800940
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|4313609|gb|AI460728.1|AI460728
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATTCCC-AAGGTCCATTCGGCACGAA
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCAT-CCCGAAGGTCCATTCGGCACGAA
EST: gi|209715583|gb|BW674320.1|BW674320
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|7924358|gb|AW830384.1|AW830384
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|192324441|gb|FK015792.1|FK015792
EST:     TGCCAATCGCTGCTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|22540930|gb|BU090773.1|BU090773
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAACTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
EST: gi|298185232|gb|HO030445.1|HO030445
EST:     TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG
genomic: TGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctct ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctctctttctcgattcaatcaaatgaatagtgtgtctccttactcttttctgtgtcctatttttagagtaaaaactggcggttttgttaataat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT