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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGAACAAGCTGCTCATGGAGGAGATTGATAGGTTGCAGAAGCAGGTCTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACATACCACCCAAAATgtaacaatctactactctgtttttatagattttgtaattattaatgatgcccaatccaaatattcaatcttttgtttgtgtatattacaatgttttactt...

Basic information

species Glycine max
transcript GLYMA08G21620.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21620.2 (Glycine max), 5'ss of exon 2
lower sequence: AC187157.4_FGT005 (Zea mays), 5'ss of exon 2
---CATGAACAAGCTGCTCATGGAGGAGATTGATAGGTTGCAGAAGCAGGTCTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACATACCACCCAAAATgtaacaatctactactctgtttttatagattttgtaattattaatgatgc-ccaatccaaatatt--caatcttttgtttgtgtatattacaatgtt-ttactt--------
   ||||||||||||||||||||||||||  ||  |  |||||||||||||||| || |||||||| || || ||||| |  || || || ||    || |  |||    |   |  |    |   |  |    || |   | |   | |    ||| ||||   |    ||    | || ||||||  |   |   |   || |||        
GGCCATGAACAAGCTGCTCATGGAGGAGAACGACCGCCTGCAGAAGCAGGTCTCGCAGCTCGTCTACGAGAACGGCTACTACCGCCAGCAGACG---CAGAGCgtacgcgtactccccctcatcgctcaactccttctccctctccctcaccttccattccaggcagcagcaccgctgtgcttgtgttcacccctccgccgttgctttgctgcag

upper sequence: GLYMA08G21620.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G52150.3 (Arabidopsis thaliana), 5'ss of exon 2
---CATGAACAAGCTGCTCATGGAGGAGATTGATAGGTTGCAGAAGCAGGTCTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACATACCACCCAAAATgtaacaat-ctactact---------ctgtttttatagattttgtaattattaatgatgcccaatccaaatatt----caatcttttgtttgtgtatattacaatgttttactt--------
    |||||||||||  | |||||||||| ||| |||||||||||||| || || || || ||| |||||||  |||| || |||||||||||  |   |||||| |  || ||||| ||            ||||| |    ||  |||| | ||   |||     |  ||  ||      |  |||||  | || | | |  | || | |   ||        
GGCAATGAACAAGCTCTTGATGGAGGAGAATGACAGGTTGCAGAAGCAAGTGTCACAGCTGGTCCATGAAAACAGCTACTTCCGTCAACATACTCC---AAATgtgaggattctactcctgcaatatcttcatttttcttatcttaataatcactag-aatgttttctttaagaataataatatccttttaatggtatgtgtatcgatttgtctttttttttcag

upper sequence: GLYMA08G21620.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 2
---CATGAACAAGCTGCTCATGGAGGAGATTGATAGGTTGCAGAAGCAGGTCTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACATACCACCCAAAATgtaacaatctactactctgtttttatagattttgtaattattaatgatgcccaatccaaatattcaatcttttgtttgtgtatattacaatgttttactt------
   ||||||||||||  | |||||||||| ||||||||||||||||||||| |||||||| || ||||| |||||||| || || ||||||||   ||| || || | || || ||  | || |||       | |  |   ||  ||  |  |  ||     | |||  | || | ||| | | | ||  || ||| |  ||      
CGCCATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAACTGGTGTATGAGAATGGCTACTTCCGCCAACATAC---CCAGAACgtgagaa-ctccttatatgctttctcg---tctccagccat--attgtctctgatgatttttttccgttttctttttctttttttttaaaggttctgattcttctg