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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAACCTAGTTCCATTCGCCGCCAGCAGCTCATTCGCGAGTGCCCTATTCTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAGgtacctaccctaaactaaagttaccgtttttacaattactttactttttaaattttttatgttgttacttgttatgttgagttgaggtaacttttttgttttgtttttgtgagttgttcag

Basic information

species Glycine max
transcript GLYMA08G21610.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21610.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G52150.3 (Arabidopsis thaliana), 5'ss of exon 1
CCAAACCTAGTTCCATTCGCCGCCAGCAGCTCATTCGCGAGTGCCCTATTCTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAGgtacctaccctaaactaaagttaccgtttttacaattactttactttttaaattttttatgttgttacttgttatgttgagttgaggtaacttttttgttttgtttttgtga-gttgttcag
| ||||| ||||| |||||||| |||||| | ||  | ||||| ||||||||||| ||||||||||| ||||| ||||| || ||||| |||||| |||||||   ||        || ||| |    ||   ||||    |   |    || ||| | || |||| ||   ||| |  | ||||  |||  ||| | || ||||| ||| | |   || ||
CTAAACCGAGTTCTATTCGCCGTCAGCAGTTGATCAGAGAGTGTCCTATTCTCTCTAACATTGAGCCTAAACAGATCAAAGTGTGGTTTCAGAACCGAAGgtaataac--------aatgttccttgcttgggaattgtagtgaat--ggaagtttctgtggtgtt-ctctctatct--acttgatctaatctttgttttgtgtttctgttatgaactttag

upper sequence: GLYMA08G21610.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 1
CCAAACCTAGTTCCATTCGCCGCCAGCAGCTCATTCGCGAGTGCCCTATTCTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAGgtacctaccctaaactaaagttaccgtttttacaattactttactttttaaattttttatgttgttacttgttatgttgagttgaggtaacttt--tttgttttgtttttgtgagttgttcag
| ||||| ||||| ||||| ||||| ||||| ||||| || || || ||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||        |    |   | | | | |||     |||  ||  |  |  |    | |   | |||  |    |  |  ||   | | ||      ||  ||| ||| ||             
CGAAACCCAGTTCTATTCGGCGCCAACAGCTGATTCGGGAATGTCCGATTCTGTCCAATATTGAGCCCAAGCAAATCAAAGTTTGGTTCCAGAACAGAAGgt-------ttggtttt--gctgctgatttagt--ttagctttttgatgcacccctctggttggttgatgagaaaatgcaggaaaagaaagcaaaattaatttggttctta------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208092299|gb|GD888930.1|GD888930
EST:     CTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAG                         ATGTAGAGAGAAGCAGAGGAAGGAGTCGTCGCGGCTGCAAGCTGTAAATAG
genomic: CTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAGgtacctaccc ... agttgttcagATGTAGAGAGAAGCAGAGGAAGGAGTCGTCGCGGCTGCAAGCTGTAAATAG
EST: gi|207740758|gb|GD714794.1|GD714794
EST:     CTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAG                         ATGTAGAGAGAGGCAGAGGAAGGAGTCGTCGCGGCTGCAAGCTGTAAA
genomic: CTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAGgtacctaccc ... agttgttcagATGTAGAGAGAAGCAGAGGAAGGAGTCGTCGCGGCTGCAAGCTGTAAA
EST: gi|207843631|gb|GD813858.1|GD813858
EST:     CTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAG                         ATGTAGAGAGAAGCAGAGGAAGGNGTCGTCGCGGCTGCAAGCTGTAAAATA
genomic: CTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAGgtacctaccc ... agttgttcagATGTAGAGAGAAGCAGAGGAAGGAGTCGTCGCGGCTGCAAGCTGTAAA-TA