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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGTACCTGGAAAGATGCACGCCTGCGGTCATGATGCTCATGTCACTATGCTTCTTGGTGCAGCAAATATTCTCAAACAGCATGAAAAAGAGATACAGgtttaattttacttttatttccgtttcttttctctataatgttatgttctgcttttccccctttgaagtattgcacttgatataaatttaaaacgtgggg...

Basic information

species Glycine max
transcript GLYMA08G21040.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411115|gb|EV280926.1|EV280926
EST:     TGCTTCTTGGTGCAGCAAATATCCTCAAACAGCATGAAAAAGAGATACAG                         GGGACTGTTGTTCTTGTTTTCCAACCAGCCGAGGAAGGAGGTGGAGGGGCT
genomic: TGCTTCTTGGTGCAGCAAATATTCTCAAACAGCATGAAAAAGAGATACAGgtttaatttt ... atatttacagGGGACTGTTGTTCTTGTTTTCCAACCAGCCGAGGAAGGAGGTGGAGGGGCT
EST: gi|213600641|gb|DB968773.1|DB968773
EST:     TGCTTCTTGGTGCAGCAAATATTCTCAAACAGCATGAAAAAGAGATACAG                         GGGACTGTTGTTCTTGTTTTCCAACCAGCCGAGNAAGGAGGTGGAGGGGCT
genomic: TGCTTCTTGGTGCAGCAAATATTCTCAAACAGCATGAAAAAGAGATACAGgtttaatttt ... atatttacagGGGACTGTTGTTCTTGTTTTCCAACCAGCCGAGGAAGGAGGTGGAGGGGCT
EST: gi|192322363|gb|FK014604.1|FK014604
EST:     TGCTTCTTGGTGCAGCAAATATTCTCAAACAGCATGAAAAAGAGATACAG                         GGGACTGTTGTTCTTGTTTTCCAACCAGCCGAGGAAGGAGGTGGAGGGGCT
genomic: TGCTTCTTGGTGCAGCAAATATTCTCAAACAGCATGAAAAAGAGATACAGgtttaatttt ... atatttacagGGGACTGTTGTTCTTGTTTTCCAACCAGCCGAGGAAGGAGGTGGAGGGGCT
EST: gi|209726379|gb|BW658011.1|BW658011
EST:     TGCTTCTTGGTGCAGCAAATATTCTCAAACAGCATGAAAAAGAGATACAG                         GGGACTGTTGTTCTTGTTTTCCAACCAGCCGAGGAAGGAGGTGGAGGGGCT
genomic: TGCTTCTTGGTGCAGCAAATATTCTCAAACAGCATGAAAAAGAGATACAGgtttaatttt ... atatttacagGGGACTGTTGTTCTTGTTTTCCAACCAGCCGAGGAAGGAGGTGGAGGGGCT
EST: gi|213614321|gb|DB964953.1|DB964953
EST:     TGCTTCTTGGTGCAGCAAATATTCTCAAACAGCATGAAAAAGAGATACAG                         GGGACTGTTGTTCTTGTTTTCCAACCA
genomic: TGCTTCTTGGTGCAGCAAATATTCTCAAACAGCATGAAAAAGAGATACAGgtttaatttt ... atatttacagGGGACTGTTGTTCTTGTTTTCCAACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAAGTACCTGGAAAGATGCACGCCTGCGGTCATGATGCTCATGTCACTATGCTTCTTGGTGCAGCAAATATTCTCAAACAGCATGAAAAAGAGATACAGgtttaattttacttttatttccgtttcttttctctataatgttatgttctgcttttccccctttgaagtattgcacttgatataaatttaaaacgtgggg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccccc