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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtactaaaatatgcactatgctcctacctttgttgtatctcttatttattttgtccttgccttgtctctaaacatgtcatgataaaatggaatcaatttg...

Basic information

species Glycine max
transcript GLYMA08G19200.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19200.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os08g12840.1 (Oryza sativa), 5'ss of exon 3
AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtactaaaata-tgcactatgctcc---tacctttgttgtatctcttatt-tattttgtccttgccttgtctctaaacatg-tcatgataaaatggaatcaatttg
|| | |||||| | || |||||||| || |||||||| |||||||| ||||| ||||| || ||| | ||||| |||||||||||||| |||||||||||| | | | | | ||| | | | | || ||| | ||| | | | || | || | || |||| | || ||
AGAATATGCAGTTGGGATCAAGAATGTCACGATAAATGATAACTTCTTCCCTGGGCATTTCCCCGAACGACCCATAATGCCTGGTGTTCTCATGGTTGAGgtatgattccactatattggcatccatgtgctgtgatcaaattgtttagtatatatggcctctgttgtttcctgaggtttgatcatctctcattgtggtc------

upper sequence: GLYMA08G19200.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g36000.1 (Oryza sativa), 5'ss of exon 3
AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtactaaaatatgcactatgctcctacctttgt-tgtatctcttatttattttgtccttgccttgtctctaaacatgtcatga-taaaatggaatcaatttg
| | ||| || | || |||||||| ||||||||||| |||||||| || || |||||||| || || || || |||||||||||||| ||||| |||||| | || | ||| ||| ||||| | || | || ||| ||| || | | ||||| ||| | | | | ||| |
GGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAGgtatacattgattttgtttgccagtacgtttgtgttcatatgttgcttaatttacatttaaca-atttctaagt-tgtggttactttactggtgcttccctt

upper sequence: GLYMA08G19200.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G055667_T01 (Zea mays), 5'ss of exon 3
AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtac-taaaatatgcactatgct-cctacctttgttgtatctcttatttattttgtccttgccttgtctctaaacatgtcatgataaaatggaatcaatttg
|| | ||| || || || |||||||||||||||||||| |||||||| || || ||||| || ||| | ||||| |||||||||||||| ||||| |||||| ||| || | ||| | ||| |||| | | || ||||| | | || | || |||| || | | | | | ||
AGAATATGCTGTTGCAATCAAGAATGTGACAATAAATGATAACTTCTTCCCAGGGCATTTCCCTGAACGACCCATAATGCCTGGTGTTCTCATGGTCGAGgtatataatattctcgttatttttcctttttttgatacctacattgcttattgagatgcaattgtttcatcattattgacatg-tagactaaagtgatgtt-

upper sequence: GLYMA08G19200.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G024482_T01 (Zea mays), 5'ss of exon 2
AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtactaaaatatgcactatgctcctacctttgttgtatctcttatttattttgtccttgccttgtctctaaacatgt---catgataaaatggaatcaatttg
|| | |||||||| || |||||||| ||||||||||| || ||||| || ||||||||||| ||| | ||||| ||||| ||||| || ||||| |||||| | || || | || | || |||| ||| | | | | | | | | ||| | ||| | | | | || |
AGAATATGCAGTGGGGATCAAGAATGTTACAATAAATGATAATTTCTTCCCAGGACATTTTCCTGAACGCCCCATAATGCCCGGTGTCCTCATGGTCGAGgtatgcaccaattcattgtgttgctgatcatgtttagggtctggatcttactaacaat-tttgatatttaattgtccttacatcaccagaggtgatgatcc--

upper sequence: GLYMA08G19200.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0357g00020.t01 (Vitis vinifera), 5'ss of exon 3
AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtactaaaatatgcactatgctcctacctttgttgtatctcttatttattttgtccttgccttgtctctaaacatgtcatgataaaatggaa-tcaatttg------
| || ||||| || || ||||||||||| ||||| || |||||||||||||| || || || || ||||| || ||||||||||| || |||||||||||| | | | | || | | || | | | ||| | ||| | | | || |||| | || | ||| |||| |
GATCTCAGCAGTAGCAATTAAGAATGTGACTATAAACGATAACTTCTTTCCTGGGCACTTCCCTGAGAGGCCAATTATGCCTGGTGTGCTCATGGTTGAGgtaatttgcttattgccaaacttc-atgttcttcat---ttgaattcaattta---ctagaaaataacagaaaatgtttgaaaaataaagaactcaacatatttgtg

upper sequence: GLYMA08G19200.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S196_99V6.1 (Physcomitrella patens), 5'ss of exon 1
AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtactaaaatatg-cactatgctcctacctttgttgtatctcttat-ttattttgtccttgccttgtctctaaacatgtcatgataaaatggaatcaatttg
| || || || || ||||| |||||||| || |||||||||||||| ||||| || || || | |||||||||||||||| || || ||||| |||||| | || || | | ||| | | | | | || || | || || || || |||| || | || ||||
GGAGTCGGCTGTTGCCATAAAAAATGTGACTATCAATGACAACTTCTTCCCTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtcatttcagggatttgatcatcttgatatgaatgtaacattgcagtgcgcatggtttaggtc-aataatgtaatagtgtgggcatttctattt-

upper sequence: GLYMA08G19200.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ31102 (Selaginella moellendorffii), 5'ss of exon 2
AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtactaaaatatgcactatgctcctacctttgttgtatctcttatttattt-tgtccttgccttgtctctaaacatgtcatgataaaatggaatcaatttg
|| | ||||| | || || || ||||| || |||||||| ||||| || || || ||||| || || || ||||||||||| ||||| |||||||||||| ||| ||| | | ||| ||| ||| || || || || | ||| | |
TGTCACGGCAGTAGGGATTAAAAACGTGACGATCAATGACAATTTCTTCCCCGGCCACTTTCCGGAGAGACCGATCATGCCTGGAGTTCTCATGGTTGAGgtagaaaacgatgagacagagaattttcttg--cgtagttctaatacgttcatgcttttaaatcttctgtccag---------------------------

upper sequence: GLYMA08G19200.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ06529 (Selaginella moellendorffii), 5'ss of exon 3
AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtactaaaatatgcactatgctcctacctttgttgtatctcttatttattttgtccttgccttgtctctaaacatgtcatgataaaatggaatcaatttg
|| | ||||| | || || || ||||| || |||||||| ||||| || || || ||||| || || || ||||||||||| ||||| |||||||||||| ||| ||| | | ||| | |||| | || | | || | |
TGTCACGGCAGTAGGGATTAAAAACGTGACGATCAATGACAATTTCTTCCCCGGCCACTTTCCGGAGAGACCGATCATGCCTGGAGTTCTCATGGTTGAGgtagaaaacgatgagacagagaattttcttgcgtagttctcatgcttttgaaatttctgtccag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207706186|gb|GD688480.1|GD688480
EST:     GGTGTTCTAATGGTTTGAG                         GCAATGGCACAAGTTGGTGGTTTGGTCATGTTGCAACCTGAAGTGGGAGG
genomic: GGTGTTCTAATGG-TTGAGgtactaaaat ... tttgctgcagGCAATGGCACAAGTTGGTGGTTTGGTCATGTTGCAACCTGAAGTGGGAGG