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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtactaaaatatgcactatgctcctacctttgttgtatctcttatttattttgtccttgccttgtctctaaacatgtcatgataaaatggaatcaatttg...

Basic information

species Glycine max
transcript GLYMA08G19200.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19200.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os08g12840.1 (Oryza sativa), 5'ss of exon 3
AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtactaaaata-tgcactatgctcc---tacctttgttgtatctcttatt-tattttgtccttgccttgtctctaaacatg-tcatgataaaatggaatcaatttg
||  | |||||| |  || |||||||| || |||||||| |||||||| ||||| ||||| || ||| | ||||| |||||||||||||| ||||||||||||  |    | |  | |    |||   | |  |  |   ||   ||| | ||| | | |  ||   | ||   |    || ||||     | ||   ||      
AGAATATGCAGTTGGGATCAAGAATGTCACGATAAATGATAACTTCTTCCCTGGGCATTTCCCCGAACGACCCATAATGCCTGGTGTTCTCATGGTTGAGgtatgattccactatattggcatccatgtgctgtgatcaaattgtttagtatatatggcctctgttgtttcctgaggtttgatcatctctcattgtggtc------

upper sequence: GLYMA08G19200.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g36000.1 (Oryza sativa), 5'ss of exon 3
AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtactaaaatatgcactatgctcctacctttgt-tgtatctcttatttattttgtccttgccttgtctctaaacatgtcatga-taaaatggaatcaatttg
 |  | ||| || |  || |||||||| ||||||||||| |||||||| || || |||||||| || || || || |||||||||||||| ||||| ||||||   |   ||    | |||   ||| ||||| |  || | ||  ||| |||    ||  |   | |||||   |||  | | |  | |||        | 
GGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAGgtatacattgattttgtttgccagtacgtttgtgttcatatgttgcttaatttacatttaaca-atttctaagt-tgtggttactttactggtgcttccctt

upper sequence: GLYMA08G19200.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G055667_T01 (Zea mays), 5'ss of exon 3
AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtac-taaaatatgcactatgct-cctacctttgttgtatctcttatttattttgtccttgccttgtctctaaacatgtcatgataaaatggaatcaatttg
||  | ||| || || || |||||||||||||||||||| |||||||| || || ||||| || ||| | ||||| |||||||||||||| ||||| ||||||  ||| ||   |  |||  | |||   |||| |   |   ||  |||||  |         | ||   |    || |||| || | |  | | |  || 
AGAATATGCTGTTGCAATCAAGAATGTGACAATAAATGATAACTTCTTCCCAGGGCATTTCCCTGAACGACCCATAATGCCTGGTGTTCTCATGGTCGAGgtatataatattctcgttatttttcctttttttgatacctacattgcttattgagatgcaattgtttcatcattattgacatg-tagactaaagtgatgtt-

upper sequence: GLYMA08G19200.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G024482_T01 (Zea mays), 5'ss of exon 2
AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtactaaaatatgcactatgctcctacctttgttgtatctcttatttattttgtccttgccttgtctctaaacatgt---catgataaaatggaatcaatttg
||  | ||||||||  || |||||||| ||||||||||| || ||||| || ||||||||||| ||| | ||||| ||||| ||||| || ||||| ||||||   |   || || | || | ||     ||||     |||   |  |  |  |  |   |  | | |||   |     ||| |  | | |  || |     
AGAATATGCAGTGGGGATCAAGAATGTTACAATAAATGATAATTTCTTCCCAGGACATTTTCCTGAACGCCCCATAATGCCCGGTGTCCTCATGGTCGAGgtatgcaccaattcattgtgttgctgatcatgtttagggtctggatcttactaacaat-tttgatatttaattgtccttacatcaccagaggtgatgatcc--

upper sequence: GLYMA08G19200.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0357g00020.t01 (Vitis vinifera), 5'ss of exon 3
AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtactaaaatatgcactatgctcctacctttgttgtatctcttatttattttgtccttgccttgtctctaaacatgtcatgataaaatggaa-tcaatttg------
  | || ||||| || || ||||||||||| ||||| || |||||||||||||| || || || || ||||| || ||||||||||| || |||||||||||| |    |     | |  || | |  ||  |  |   |   ||| | |||     |      |  |  || ||||    | || |  ||| ||||  |       
GATCTCAGCAGTAGCAATTAAGAATGTGACTATAAACGATAACTTCTTTCCTGGGCACTTCCCTGAGAGGCCAATTATGCCTGGTGTGCTCATGGTTGAGgtaatttgcttattgccaaacttc-atgttcttcat---ttgaattcaattta---ctagaaaataacagaaaatgtttgaaaaataaagaactcaacatatttgtg

upper sequence: GLYMA08G19200.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S196_99V6.1 (Physcomitrella patens), 5'ss of exon 1
AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtactaaaatatg-cactatgctcctacctttgttgtatctcttat-ttattttgtccttgccttgtctctaaacatgtcatgataaaatggaatcaatttg
 |  || || || || ||||| |||||||| || |||||||||||||| ||||| || || ||  |  |||||||||||||||| || || ||||| ||||||  |    ||  ||      |  |    ||| | |   | | |  ||    ||  | ||  ||   || ||  |||| ||  |         || |||| 
GGAGTCGGCTGTTGCCATAAAAAATGTGACTATCAATGACAACTTCTTCCCTGGTCACTTCCCCCAGCGGCCCATCATGCCTGGGGTGCTCATGGTAGAGgtaagacgtcatttcagggatttgatcatcttgatatgaatgtaacattgcagtgcgcatggtttaggtc-aataatgtaatagtgtgggcatttctattt-

upper sequence: GLYMA08G19200.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ31102 (Selaginella moellendorffii), 5'ss of exon 2
AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtactaaaatatgcactatgctcctacctttgttgtatctcttatttattt-tgtccttgccttgtctctaaacatgtcatgataaaatggaatcaatttg
 ||  | ||||| |  || || || ||||| || |||||||| ||||| || || || ||||| || || || ||||||||||| ||||| ||||||||||||  |||  |||    |      |  |||    |||  ||| ||   ||  ||   ||   |  ||| |  |                            
TGTCACGGCAGTAGGGATTAAAAACGTGACGATCAATGACAATTTCTTCCCCGGCCACTTTCCGGAGAGACCGATCATGCCTGGAGTTCTCATGGTTGAGgtagaaaacgatgagacagagaattttcttg--cgtagttctaatacgttcatgcttttaaatcttctgtccag---------------------------

upper sequence: GLYMA08G19200.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ06529 (Selaginella moellendorffii), 5'ss of exon 3
AGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGgtactaaaatatgcactatgctcctacctttgttgtatctcttatttattttgtccttgccttgtctctaaacatgtcatgataaaatggaatcaatttg
 ||  | ||||| |  || || || ||||| || |||||||| ||||| || || || ||||| || || || ||||||||||| ||||| ||||||||||||  |||  |||    |      |  |||   |   |||| |  || |    |   || |  |                                    
TGTCACGGCAGTAGGGATTAAAAACGTGACGATCAATGACAATTTCTTCCCCGGCCACTTTCCGGAGAGACCGATCATGCCTGGAGTTCTCATGGTTGAGgtagaaaacgatgagacagagaattttcttgcgtagttctcatgcttttgaaatttctgtccag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207706186|gb|GD688480.1|GD688480
EST:     GGTGTTCTAATGGTTTGAG                         GCAATGGCACAAGTTGGTGGTTTGGTCATGTTGCAACCTGAAGTGGGAGG
genomic: GGTGTTCTAATGG-TTGAGgtactaaaat ... tttgctgcagGCAATGGCACAAGTTGGTGGTTTGGTCATGTTGCAACCTGAAGTGGGAGG