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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCCTTAACTTTGCCTGGTCCTAATGATACCGTCGCAACCCAGAAGGATAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatactattcaattaaactccaataatttgttacaattttctatttttttataattaattatcaataattagttttaaaataaattaatctaaaa...

Basic information

species Glycine max
transcript GLYMA08G19170.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5760491|gb|AI965854.1|AI965854
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|10231823|gb|BE800711.1|BE800711
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|26057775|gb|CA800689.1|CA800689
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|151407842|gb|EV277657.1|EV277657
EST:     TAAGTTTTCAAACAAAGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|9820633|gb|BE556143.1|BE556143
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|12687896|gb|BG154292.1|BG154292
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|13311641|gb|BG405292.1|BG405292
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|27424902|gb|CA936422.1|CA936422
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|13311235|gb|BG404868.1|BG404868
EST:     TAAGTTTT-AAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|27425050|gb|CA936570.1|CA936570
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|26058205|gb|CA801119.1|CA801119
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|26047989|gb|CA784617.1|CA784617
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|20498026|gb|BQ272956.1|BQ272956
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|37995638|gb|CF807227.1|CF807227
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|27424783|gb|CA936303.1|CA936303
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|9820322|gb|BE555832.1|BE555832
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|21677655|gb|BQ630006.1|BQ630006
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|9564663|gb|BE474172.1|BE474172
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|9820227|gb|BE555737.1|BE555737
EST:     TAAGTTTTCATACATGGGCCTTAGCACCGGAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAA
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAA
EST: gi|26057553|gb|CA800467.1|CA800467
EST:     CCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: CCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|120492166|gb|EH220333.1|EH220333
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTT                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|9902115|gb|BE611083.1|BE611083
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|7234395|gb|AW569733.1|AW569733
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|10237294|gb|BE806182.1|BE806182
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
EST: gi|26047340|gb|CA784162.1|CA784162
EST:     TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTG                         GTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT
genomic: TAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatac ... atacatatagGTGGGCATACGATAGGTACAAGTGCTTGCCGATCTTTCGCAGACAGAATAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGCCTTAACTTTGCCTGGTCCTAATGATACCGTCGCAACCCAGAAGGATAAGTTTTCAAACAAGGGCCTTAACACCGAAGACCTCGTCATTCTTGCTGgtactcatactattcaattaaactccaataatttgttacaattttctatttttttataattaattatcaataattagttttaaaataaattaatctaaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataaa