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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCTCGAGCATTTTCTTTTCTTCAGATTCTTGAGCTCATGCCATTTTTATTGCGGCCTCCAAGTATGTTATTTGTGGAAAATGTTGTTGGATTTGAGgtttgtcttgtttgattcaactcattggttatgactccaaagtaatttcattaatgatttcttctattcattccttcttttttcctgattacttccttggttgcag

Basic information

species Glycine max
transcript GLYMA08G18960.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18960.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G157589_T04 (Zea mays), 5'ss of exon 3
TGATGCTCGAGCATTTTCTTTTCTTCAGATTCTTGAGCTCATGCCATTTTTATTGCGGCCTCCAAGTATGTTATTTGTGGAAAATGTTGTTGGATTTGAGgtttgtcttg--tttgattca-actcattggttatgactccaaagtaatttcattaatgatttcttctattcattccttcttttttcctgattacttccttggttgcag
||||||||| |||||||| ||  |  |||||||| | ||||||| |    |       ||||||   ||||||||||||||||| || ||||||||||||||   | |    |||  || | | |  || |||   |  |   |     |  |     ||  | |  | ||||||  | |                             
TGATGCTCGTGCATTTTCGTTCATCAAGATTCTTAACCTCATGCAAGACATGAGCTATCCTCCACAAATGTTATTTGTGGAAAACGTAGTTGGATTTGAGgtggatataaactttacttgatatttttttgtttcaatacttgaacttctcaacagtggacatgtcttgttcatttatgccag--------------------------

upper sequence: GLYMA08G18960.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G25480.1 (Arabidopsis thaliana), 5'ss of exon 4
TGATGCTCGAGCATTTTCTTTTCTTCAGATTCTTGAGCTCATGCCATTTTTATTGCGGCCTCCAAGTATGTTATTTGTGGAAAATGTTGTTGGATTTGAGgtttgtcttgtttgattcaactcattggttatgactccaaagtaatttcattaatgatttcttctattcattccttcttttttcctgattacttccttggttgcag
||||||||| || ||||| |||||   |||||||||||| || ||   |  |     |||||||   ||||||||||| || |||||||||||||||||||  | |  |||||| ||   ||     | ||     |     |  | ||  | ||  | | |    |     | || ||  ||  || |    |   | | |||||
TGATGCTCGGGCTTTTTCGTTTCTCAGGATTCTTGAGCTTATACCGCATACAACAAAGCCTCCACAAATGTTATTTGTAGAGAATGTTGTTGGATTTGAGg--tatagtgtttgcttatgcttcccagctagagtact----tgttctcgatcatcttctttgaagtcgtgacatttttgcttattggtggtgtttgttggtgcag