Sequence
atgc intronic sequence ATGC exonic sequenceCCCTGGCTGCCAAGAAACTGGAAAGTATGGGCCCTGTCACTAAAAATGAATGGATTATGGTCGGCACAATGCTTCTTGCAGTGTCTTTGTGGATCTTTGGgtatgtcttctgccgtctattatatctacatctatggatgaatgtttttttggactgatttctaagtttgttgactttttgggtggagaacttgatcctt...
Basic information
species | Glycine max |
transcript | GLYMA08G18910.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G18910.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G040933_T02 (Zea mays), 5'ss of exon 3
CCCTGGCTGCCAAGAAACTGGAAAGTATGGGCCCTGTCACTAAAAATGAATGGATTATGGTCGGCACAATGCTTCTTGCAGTGTCTTTGTGGATCTTTGGgtatg-tcttctgccgtctattatatctacatc-tatggatgaatgtttttttggactgatttctaagtttgttgactttttgggtggagaacttgatcctt
| ||||||| ||||||||| | ||||||||||| |||||||| |||| | ||||| | ||||||||| |||||||||| || || ||| | |||||||| | | | | | | | || || | ||| | ||| | | || || |||| || ||| | | | | | |
CACTGGCTGAAAAGAAACTGAAGCTCATGGGCCCTGTGACTAAAAACGAATCGGTTATGATTGGCACAATGATTCTTGCAGTCTCCTTATGGGTTTTTGGgtaaggtttcccataactgaagaaaattatctcatcctactgattcacgattttaatacaatttgcagcttgtgagctattttgctctatgattctactt--
upper sequence: GLYMA08G18910.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G64290.1 (Arabidopsis thaliana), 5'ss of exon 2
CCCTGGCTGCCAAGAAACTGGAAAGTATGGGCCCTGTCACTAAAAATGAATGGATTATGGTCGGCACAATGCTTCTTGCAGTGTCTTTGTGGATCTTTGGgtatgtctt------ctgccgtctattatatctacatctatggatgaatgtttttttggactgatttctaagtttgttgactttttgggtggagaacttgatcctt
| ||||| | |||||| | |||||||||||||||||||| |||||||| |||||||| |||||||||||||| || || | ||||||| ||||| ||||| || | | | || |||| | | | || | || | | || | | | |||| | | | |
GTATTGCTGCAACGAAACTCAAGCAAATGGGCCCTGTCACTAAAAACGAATGGATCATGGTCGGTACAATGCTTCTTGCTGTCACTCTTTGGATCTGCGGgtaagtcttagatcactttcatgttttgtatc-ataccgttgattaaaaaaatct---gagtattccatgggtttaatattatatgcag-----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20498104|gb|BQ273034.1|BQ273034EST: TGGATTATGGTCGGCACAATGCTTCTTGCAGTGTCTTTGTGGATCTTTGG AGACACTATTGGCATAGCAAGTGCTGTAGCTGCAATGATTGGTTTATCAAT
genomic: TGGATTATGGTCGGCACAATGCTTCTTGCAGTGTCTTTGTGGATCTTTGGgtatgtcttc ... ggttctgcagAGACACTATTGGCATAGCAAGTGCTGTAGCTGCAATGATTGGTTTATCAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCCTGGCTGCCAAGAAACTGGAAAGTATGGGCCCTGTCACTAAAAATGAATGGATTATGGTCGGCACAATGCTTCTTGCAGTGTCTTTGTGGATCTTTGGgtatgtcttctgccgtctattatatctacatctatggatgaatgtttttttggactgatttctaagtttgttgactttttgggtggagaacttgatcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtgg