Sequence
atgc intronic sequence ATGC exonic sequenceTTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATgtaagtgaactgagaatggcatgaataaaattttatcttgatttgatttgtttagtattccatttccatataaggtatatcaatgagttttacgttgtct...
Basic information
species | Glycine max |
transcript | GLYMA08G18810.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G53650.2 (Arabidopsis thaliana), 5'ss of exon 2
TTTTAACCAAGGAAGGAGA---AGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATgtaagtgaactgagaatggcatgaataaaattttatcttgatttgatttgtttagtattccatttccatataaggtatatcaatgagttttacgttgtct
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---TAACCAAGGGAGGAGAGTGAGGTTACCTGGAAGAGCTTCTAAGGCTCAAAGAGAAGATAGTATTAGAAGAACAGTGTATGTCTCTGACATTGATCAGAGTgtaagttacttaa--accctctttttagattttcaga--aaaaagattcagttttt-caacattgtcacctatt-tttttttttttttttcaaatag---
upper sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G14450.1 (Arabidopsis thaliana), 5'ss of exon 2
TTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATgtaagtgaactgagaatggcatgaataaaattttatcttgatttgatttgtttagtattccatttccatataaggtatatcaatgagttttacgttgtct
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CTATAGCCAAGGGAGAAGGAGGTTAACTGGAAGAATTTCTAAGGCTCAAAGAGAGGATAGTATTAGAAGAACAGTTTATGTTTCTGACATTGACCAGAGTgttagtt--ttgtttttagtcttt-taaggttttgggaagaattcg---agttaatattca---ttaatgtaacataattct----gctttgcgatttag
upper sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 2
TTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATgtaagtg-aactgagaatggcatgaataaaattttatcttgattt----gatttgtttagtattccatttccatataagg-------tatatcaatga-gttttacgttgtct------
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TTATAACCAAGGAAGGAGGAGGTTGAGTGGGAGAGCATTTAGAGCTCAACGTGAAGATAGTATTCGCCGCACTGTGTATGTTTCTGATATTGATCAGCATgtaagtgcaaatggaaggattctcattcatttattacttttactttgctgaatattagaaaatctctttcttgttttagagtgatgctgtaataatgccattttatgtcttcaaattagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19934604|gb|BQ079634.1|BQ079634EST: GAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCAT GTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAA
genomic: GAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATgtaagtgaac ... cctggtgtagGTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATgtaagtgaactgagaatggcatgaataaaattttatcttgatttgatttgtttagtattccatttccatataaggtatatcaatgagttttacgttgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC