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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGGGGTCACGCTTGGTCCCAAGGGAAGAAATGTTGTTCTCGAGAGCAAGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAGgtgactttttttttttgaattttgtcgtactattgttatggttgtttcttttttcgaatttaaagcaggtaattattgtaaaaaccgacaaacttatcat...

Basic information

species Glycine max
transcript GLYMA08G18760.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G133698_T03 (Zea mays), 5'ss of exon 3
GGTTGGGGTCACGCTTGGTCCCAAGGGAAGAAATGTTGTTCTCGAGAGCAAGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAGgtg---------------actttttttttttgaattttgtcgtactattgt--------tatggttgtttcttttttcgaatttaaagcaggtaat---tattgtaaaaaccgacaaacttatcat----------------------
                        |||||| ||||||||| | |||||||||||||| || || ||||| |||||||| ||||| || || || | ||||||                |   || |  || ||||||  | |     | ||        ||  ||||| | | ||||    |  ||  |  || ||   | || || |   | | |  ||||| |                       
------------------------GGGAAGGAATGTTGTTTTGGAGAGCAAGTATGGTTCTCCTAAAATTGTTAACGATGGTGTTACAGTTGCCAGAGAGGTACAGTGCAATGTTACCATGGTTgtacttagaatttgattgctagctcgtaaattacataacgttgtatatatttttttctccaattcttgtcatacatgttttacaggtc-atattcttataacccatgtaatgcatatactttag

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 3
GGTTGGGGTCACGCTTGGTCCCAAGGGAAGAAATGTTGTTCTCGAGAGCAAGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAGgtgactttttttttttgaattttgtcgtactattgttatggttgtttcttttttcgaatttaaagcaggtaattattgtaaaaaccgacaaacttatcat-------------------------
 || ||||| || ||||| || |||||  ||||||| || ||||| |||||||||||||| || ||||| || || || ||||||||||| || || ||||||    | |   |   || ||   | |  | ||||| | | |  | ||     |  |       |      || ||||     ||||    | |   ||                         
CGTCGGGGTTACTCTTGGACCAAAGGGGCGAAATGTAGTCCTCGAAAGCAAGTATGGCTCACCTAAAATTGTCAATGATGGTGTCACTGTGGCAAAGGAGgtgcacatctgactacaaactt-accatcgt-ttgttcttgctcgtactgcaaccataccctgctctaac--ttcttgtggctgccgagtttcctcatatgttctgggctgtggccatgcaccag

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 3
GGTTGGGGTCACGCTTGGTCCCAAGGGAAGAAATGTTGTTCTCGAGAGCAAGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAGgtg----actttttttttttgaattttgtcgtactattgttatggttgtttcttttttcgaatttaaagcaggtaattattgtaaaaaccgacaaacttatcat
 ||||| ||||| ||||| || || || |||||||||||||| |||||||||||||| || || | ||| ||||| || ||||||||||| || |  |||||     | || || | | |  |     |  |  |  | |  |  ||  ||  || |   |  |||| |        |  | ||                    
TGTTGGTGTCACACTTGGACCAAAAGGGAGAAATGTTGTTCTTGAGAGCAAGTATGGATCCCCAAGAATTGTTAATGATGGTGTCACTGTTGCGAGGGAGgtatgaaatttattgtctgtttaaccaattatgttcctttcgtttttaattacttctctaagcttaaggttttcttctgct-tag-------------------

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G55490.2 (Arabidopsis thaliana), 5'ss of exon 3
GGTTGGGGTCACGCTTGGTCCCAAGGGAAGAAATGTTGTTCTCGAGAGCAAGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAGgtgactttttttttttgaattttgtcgt-actattgttatggtt-gtttcttttttcgaatttaaagcaggtaattattgtaaaaaccgacaaacttatcat
 ||||| || || ||||| ||||| ||| ||||||||||||| |||||||||||||| || ||   ||| ||||| || ||||| ||||| || | |||||| |     || ||     | |  |  | | | ||||| |  ||    |   | || || ||| || |   |   |  ||||                    
TGTTGGTGTTACACTTGGACCCAAAGGACGAAATGTTGTTCTTGAGAGCAAGTATGGATCACCACGAATTGTTAATGATGGTGTGACTGTTGCAAGAGAGgt-atggaattattacccctctgataatgatttttgttctcattcaactgagtcttagagtttcaaac---tttctcctgtag-------------------

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 5'ss of exon 3
GGTTGGGGTCACGCTTGGTCCCAAGGGAAGAAATGTTGTTCTCGAGAGCAAGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAGgtgactttttttttttgaattttgtcgtactattgttatggttgtttcttttttcgaatttaaagcaggtaattattgtaaaaaccgacaaacttatcat
 || || || || |||||||| || || || |||||||| || ||||||||||||||||| || ||||| ||||| || ||||| ||||| || ||||||||   ||   || | | |||||| |   | |  |  | | | | |||    ||    ||  ||   ||  |         ||        || || || |
AGTGGGAGTTACTCTTGGTCCAAAAGGCAGGAATGTTGTCCTAGAGAGCAAGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAGgtatgttaagttctattaattttttttaagttctagttttgcttttttaagttgaatatggaacaaagccagcaggctataagttttgtcaatttctctt

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S14_298V6.1 (Physcomitrella patens), 5'ss of exon 2
GGTTGGGGTCACGCTTGGTCCCAAGGGAAGAAATGTTGTTCTCGAGAGCAAGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAGgt---gactttttttttttgaattttgtcgtact-attgttatggttgtttcttttttcgaatttaaagcaggtaattattgtaaaaaccgacaaacttatcat---------------------------------------------------------------------------------------
 ||||| |||||  | || ||||||||  |||| || || || ||||||||||||||||| || ||||| || || |||||||||||||| || || |||||   | |||   |  | |  ||     || | | ||| |  || ||  ||  |||||     | |  || | |  || || | |     |       ||  ||                                                                                       
TGTTGGTGTCACTTTGGGGCCCAAGGGCCGAAACGTCGTGCTTGAGAGCAAGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggcttgcatcctctctatgagcccggatttattatgttgtttacttggtttttttggataagcgc-gattttttttttgaggggggcggggtgtagaatcttgggataaggtttcgttctttcttgaattagatgcgcatgagtttgagcttttcaattaacgcgctgaatctcggaactcaacag

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ36935 (Selaginella moellendorffii), 5'ss of exon 2
GGTTGGGGTCACGCTTGGTCCCAAGGGAAGAAATGTTGTTCTCGAGAGCAAGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAGgtgactttttttttttgaattttgtcgtactattgttatggttgtttcttttttcgaatttaaagcaggtaattattgtaaaaaccgacaaacttatcat
 || || || ||  | ||||||||||||||||| || || ||||||||||||||||| || || || || || ||||| || |||||||| || ||||||||             | || |  | | ||| |    | | ||  |||   | || |  |||  ||                                   
AGTGGGAGTTACTTTGGGTCCCAAGGGAAGAAACGTGGTGCTCGAGAGCAAGTATGGATCTCCAAAGATTGTCAACGATGGAGTCACTGTTGCCAAAGAGgtaggaaggaaaagataaaatgcggc-tacaaagtcttttgtgtttttgctctttg--tttgcag-----------------------------------

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ33580 (Selaginella moellendorffii), 5'ss of exon 2
GGTTGGGGTCACGCTTGGTCCCAAGGGAAGAAATGTTGTTCTCGAGAGCAAGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAGgtgactttttttttttgaattttgtcgtactattgttatggttgtttcttttttcgaatttaaagcaggtaattattgtaaaaaccgacaaacttatcat
 || || || ||  | ||||||||||||||||| || || ||||||||||||||||| || || || || || ||||| || |||||||| || ||||||||           ||  |||   |    |   |  ||   | | || || |||     |||  ||                                   
AGTGGGAGTTACTTTGGGTCCCAAGGGAAGAAACGTGGTGCTCGAGAGCAAGTATGGATCTCCAAAGATTGTCAACGATGGAGTCACTGTTGCCAAAGAGgtagagggaaaagttaaaatgcggctacaaagtcttttgtgcttttgctcttt----gtttgcag-----------------------------------

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ32217 (Selaginella moellendorffii), 5'ss of exon 2
GGTTGGGGTCACGCTTGGTCCCAAGGGAAGAAATGTTGTTCTCGAGAGCAAGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAGgtg---actttttttttttgaattttgtcgtactattgttatggttgtttcttttttcgaatttaaagcaggtaattattgtaaaaaccgacaaacttatcat
 ||||| || ||  | |||||||| ||||| ||||| || ||||||||||||||||| || || || ||  | ||||| |||||||| ||  | || || ||     | || | ||| |   |  ||  ||  | |  | ||||   | | ||||                                                
TGTTGGAGTGACTTTGGGTCCCAAAGGAAGGAATGTCGTCCTCGAGAGCAAGTATGGTTCTCCAAAGATTATCAACGATGGTGTCACGGTGACCAAGGAAgtatgtgccttgtctttcttgttgatgctgtggtttgctgatggaaatgtattttag----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207747526|gb|GD717907.1|GD717907
EST:     CCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAG                         GTTGAGTTGGAGGATCCCGTTGAGAATATTGGTGCCAAGTTGGTGAGACAA
genomic: CCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAGgtgacttttt ... gtttggtaagGTTGAGTTGGAGGATCCCGTTGAGAATATTGGTGCCAAGTTGGTGAGACAA
EST: gi|193564338|gb|FK519201.1|FK519201
EST:     AGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAG                         GTTGAGTTGGAGGATCCCGTTGAGAATATTGGTGCCAAGTTGGTGAGACAA
genomic: AGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAGgtgacttttt ... gtttggtaagGTTGAGTTGGAGGATCCCGTTGAGAATATTGGTGCCAAGTTGGTGAGACAA
EST: gi|193528896|gb|FK483628.1|FK483628
EST:     AGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAG                         GTTGAGTTGGAGGATCCCGTTGAGAATATTGGTGCCAAGTTGGTGAGACAA
genomic: AGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAGgtgacttttt ... gtttggtaagGTTGAGTTGGAGGATCCCGTTGAGAATATTGGTGCCAAGTTGGTGAGACAA
EST: gi|17401201|gb|BM177983.1|BM177983
EST:     AGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAG                         GTTGAGTTGGAGGATCCCGTTGAGAATATTGGTGCCAAGTTGGTGAGACAA
genomic: AGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAGgtgacttttt ... gtttggtaagGTTGAGTTGGAGGATCCCGTTGAGAATATTGGTGCCAAGTTGGTGAGACAA
EST: gi|20207910|gb|BQ133999.1|BQ133999
EST:     AGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAG                         GTTGAGTTGGAGGATCCCGTTGAGAATATTGGTGCCAAGTTGGTGAGACAA
genomic: AGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAGgtgacttttt ... gtttggtaagGTTGAGTTGGAGGATCCCGTTGAGAATATTGGTGCCAAGTTGGTGAGACAA
EST: gi|15201304|gb|BI424801.1|BI424801
EST:     AGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAG                         GTTGAGTTGGAGGATCCCGTTGAGAATATTGGTGCCAAGTTGGTGAGACAA
genomic: AGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAGgtgacttttt ... gtttggtaagGTTGAGTTGGAGGATCCCGTTGAGAATATTGGTGCCAAGTTGGTGAGACAA
EST: gi|193655361|gb|FK596651.1|FK596651
EST:     GACGGTGTCACTGTCGCTAAAGAG                         GTTGAGTTGGAGGATCCCGTTGAGAATATTGGTGCCAAGTTGGTGAGACAA
genomic: GACGGTGTCACTGTCGCTAAAGAGgtgacttttt ... gtttggtaagGTTGAGTTGGAGGATCCCGTTGAGAATATTGGTGCCAAGTTGGTGAGACAA