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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGTCTTGATGTTTTCCATAGTAACTCGCTTAAAGACTCCATGCAAAAGTTCTTTCAGCCTGAGGTTTTAGATGGCAACAATAAGTACAAGTGTGATAGgtgagtcaccgactgactgagtgcgtgtgcaagtgtgtgtatgcgtttcgatttttaaatgttcggacaaaacttagatacaattccttaggttaggtgt...

Basic information

species Glycine max
transcript GLYMA08G18720.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18720.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G14400.1 (Arabidopsis thaliana), 5'ss of exon 2
TTAGTCTTGATGTTTTCCATAGTAACTCGCTTAAAGACTCCATGCAAAAGTTCTTTCAGCCTGAGGTTTTAGATGGCAACAATAAGTACAAGTGTGATAGgtgagtcaccgactgactgagtgcgtgtgcaagtgtgtgtatgcgtttcgatttttaaatgttcggacaaaacttagatacaattccttaggttaggtgt
| ||||||||  |||| || |||| |||  | || || ||  ||||||||||||||||  | ||| |||||||||||||||||||||| |  || ||   || ||| |    ||     |||  || |     |  || | || | |||  ||||||| ||       |||  ||  ||   |||               
TCAGTCTTGAGATTTTGCAGAGTAGCTCTGTGAAGGAGTCATTGCAAAAGTTCTTTCAATCAGAGATTTTAGATGGCAACAATAAGTATAGATGCGAGTCgtaagtgattt-ctcttctagtttgtctttctttcagtttttgtggttctgtttttaactg-------aaattttcaatttgatttag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789471|gb|BG652062.1|BG652062
EST:     TCTTTCAGCCTGAGGTTTTAGATGGCAAC-ATGAAGTACAAGTGTGATAG                         TTGTAAGAAATTAGTGGCCGCTAAGAAGCAGATGTCCATACTTCAAGCACC
genomic: TCTTTCAGCCTGAGGTTTTAGATGGCAACAAT-AAGTACAAGTGTGATAGgtgagtcacc ... tgttgttcagTTGTAAGAAATTAGTGGCCGCTAAGAAGCAGATGTCCATACTTCAAGCACC
EST: gi|19052919|gb|BM731586.1|BM731586
EST:     TTCTTTCAGCCTGAGGTTTTAGATGGCAACAATAAGTACAAGTGTGATAG                         TTGTAAGAAATTAGTGGCCGCTAAGAAGCAGATGTCCATACTTCAAGCACC
genomic: TTCTTTCAGCCTGAGGTTTTAGATGGCAACAATAAGTACAAGTGTGATAGgtgagtcacc ... tgttgttcagTTGTAAGAAATTAGTGGCCGCTAAGAAGCAGATGTCCATACTTCAAGCACC