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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaatgaagagtgatgcatgatttgtgtttatttactttggctgattgtttatgatctgaattgggatttgtctacttctgcag

Basic information

species Glycine max
transcript GLYMA08G18110.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6667322|gb|AW278773.1|AW278773
EST:     TTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|209716827|gb|BW654346.1|BW654346
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|33390610|gb|CA853805.1|CA853805
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|7684880|gb|AW755528.1|AW755528
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|120529990|gb|EH258124.1|EH258124
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAG-TCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|18040122|gb|BM308416.1|BM308416
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|209709643|gb|BW661970.1|BW661970
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|213606494|gb|DB971118.1|DB971118
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|254325442|gb|GR838323.1|GR838323
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|5605835|gb|AI899933.1|AI899933
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|14259251|gb|BG882159.1|BG882159
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|213615259|gb|DB963453.1|DB963453
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|209701834|gb|BW661327.1|BW661327
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|209705768|gb|BW661436.1|BW661436
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|213607326|gb|DB967063.1|DB967063
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|254342547|gb|GR858709.1|GR858709
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|209724199|gb|BW658105.1|BW658105
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|209727731|gb|BW658470.1|BW658470
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|254342212|gb|GR853349.1|GR853349
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|209725229|gb|BW672704.1|BW672704
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|22931766|gb|BU548905.1|BU548905
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|6454158|gb|AW184906.1|AW184906
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|213592581|gb|DB961841.1|DB961841
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|213599515|gb|DB968340.1|DB968340
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT