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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttattgctcttaactttcaatttggtttaattttttgtttatattaaagagaagggtatggtttgtgtttcaactgatttcgttgtgttgtggaacag

Basic information

species Glycine max
transcript GLYMA08G17810.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G17810.3 (Glycine max), 5'ss of exon 2
lower sequence: AT1G79210.2 (Arabidopsis thaliana), 5'ss of exon 2
----------------------------------------ATTTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttattgctcttaactttcaatttggtttaattttttgtttatattaaagagaagggtatggtttgtgtttcaactgatttcgttgtgttgtggaacag
                                         |   ||    |||||   |||||||| |||||||| ||||||||||||||||| || |||||||    ||| |  | | | ||||| |  | |   ||| ||   || |      ||| ||| |  || | | ||  | | || | || || || || |||||
TAAATTTCCAGAGATGACACTATTTCGCATTTTTTGCAGCTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAGgtattaactttgtttatca-tatcaatgttatct--ctttctgagcattt-----ggaacggtttc-ttcggggtttgattcatgttgtggt-ttatgaaacag

upper sequence: GLYMA08G17810.3 (Glycine max), 5'ss of exon 2
lower sequence: AT1G16470.2 (Arabidopsis thaliana), 5'ss of exon 1
--------------ATTTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttattgctcttaactttcaatttggtttaattttttgtttatattaaagagaagggtatggtttgtgtttcaactgatttcgttgtgttgtg----gaacag
               |   ||| |  ||| |        | || |  |  |  |            | | | ||   | ||| |  |||   |||||||  |  |   | ||  ||  | ||| | |  |    ||| | |||| || | | ||| |||| |||||  ||||     |||||
GGAAATTGATCCTACTCGTTTGTGTTGTTCACAGCTTTCGCTAATTTGCTTAAGGAGCTATGGGAGATAGTCAGTACTCGTTTTCTCTCACCACTTTCAGgtacga--acttggttaatcatagtgagtattttggt-tagtttttgctgcgactaattt-gttgtactgtgtctgaaacag

upper sequence: GLYMA08G17810.3 (Glycine max), 5'ss of exon 2
lower sequence: AT1G79210.3 (Arabidopsis thaliana), 5'ss of exon 2
---------------------------ATTTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttattgctcttaactttcaatttggtttaattttttgtttatattaaagagaagggtatggtttgtgtttcaactgatttcgttgtgttgtggaacag
                            |   ||    |||||   |||||||| |||||||| ||||||||||||||||| || |||||||    ||| |  | | | ||||| |  | |   ||| ||   || |      ||| ||| |  || | | ||  | | || | || || || || |||||
ATGACACTATTTCGCATTTTTTGCAGCTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAGgtattaactttgtttatca-tatcaatgttatct--ctttctgagcattt-----ggaacggtttc-ttcggggtttgattcatgttgtggt-ttatgaaacag

upper sequence: GLYMA08G17810.3 (Glycine max), 5'ss of exon 2
lower sequence: AT1G16470.1 (Arabidopsis thaliana), 5'ss of exon 2
------ATTTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattg---ttattgctcttaactttcaatttggtttaattttttgtttatattaaagagaagggtatggtttgtgtttcaactgatttcgttgtgttgtggaacag
       |   ||||          ||||| ||||||||||| ||||||||||||||||| || |||||      |  ||  || ||      | |||||||  | |||||| |   | |||   |       ||   ||||| | ||                         
CTTTCGCTAATTTGCTTAAGGAGCTATGGGAGATAGTCAGTACTCGTTTTCTCTCACCACTTTCAGgtacgaacttggttaatcatagtgagtattttggtt--agtttttgctgcgactaatttg------ttgtactgtgtctgaaacag---------------------

upper sequence: GLYMA08G17810.3 (Glycine max), 5'ss of exon 2
lower sequence: AT1G79210.1 (Arabidopsis thaliana), 5'ss of exon 2
-ATTTCTTGCGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttattgctcttaactttcaatttggtttaattttttgtttatattaaagagaagggtatggtttgtgtttcaactgatttcgttgtgttgtggaacag
  |   ||    |||||   |||||||| |||||||| ||||||||||||||||| || |||||||    ||| |  | | | ||||| |  | |   ||| ||   || |      ||| ||| |  || | | ||  | | || | || || || || |||||
CTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAGgtattaactttgtttatca-tatcaatgttatct--ctttctgagcattt-----ggaacggtttc-ttcggggtttgattcatgttgtggt-ttatgaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12688055|gb|BG154391.1|BG154391
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|7690855|gb|AW758992.1|AW758992
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|27446035|gb|CA953158.1|CA953158
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|15815476|gb|BI787751.1|BI787751
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|19268728|gb|BM884984.1|BM884984
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|4305924|gb|AI443831.1|AI443831
EST:     TTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: TTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|27425474|gb|CA936994.1|CA936994
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|37996790|gb|CF808379.1|CF808379
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|15285795|gb|BI469686.1|BI469686
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|12687912|gb|BG154308.1|BG154308
EST:     GTTTATCATGGGGGATNACGTCAGTATTCGTTTTCTCTCACCACATTTAG                         C
genomic: GTTTATCATGGGGGAT-A-GTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacag-
EST: gi|12687912|gb|BG154308.1|BG154308
EST:     GTTTATCATGGGGGATNACGTCAGTATTCGTTTTCTCTCACCACATTTAG                         C
genomic: GTTTATCATGGGGGAT-A-GTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacag-
EST: gi|26058340|gb|CA801254.1|CA801254
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|298195959|gb|HO044350.1|HO044350
EST:     GGTTTATCATGGGTGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: GGTTTATCATGGG-GGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|15000807|gb|BI321621.1|BI321621
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|8283306|gb|BE020867.1|BE020867
EST:     ATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: ATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|26058444|gb|CA801358.1|CA801358
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|13563115|gb|BG551335.1|BG551335
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGTTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|208056326|gb|GD853305.1|GD853305
EST:     TATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: TATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|298192268|gb|HO036350.1|HO036350
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|17023069|gb|BM094103.1|BM094103
EST:     GGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: GGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|6567102|gb|AW234729.1|AW234729
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|27424967|gb|CA936487.1|CA936487
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|24135847|gb|BU926357.1|BU926357
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC