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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTCCAGgtttgattaatacaaatccatatttctttcatgcttttgattttgctttatgttttagaaacacttttgcgacactgccaatgtctctcgtgttggcttgatgtctctccttctttttgttttttcctttatctttatttattttttcatttgttatctgcatttag

Basic information

species Glycine max
transcript GLYMA08G17400.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G17400.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g07770.1 (Oryza sativa), 5'ss of exon 2
AGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTCCAGgtttgattaatacaaatccatatttctttcatgcttttgattttgctttatgttttagaaacacttttgcgacactgccaatgtctctcgtgttggcttgatgtctctccttctttttgttttttcctttatctttatttattttttc--atttgttatctgcatttag
|||| || || || || ||||||||||| ||||| |||||||| |||||||| ||||||||||||||||| ||||||||    |   ||   | ||| |   |||   |   |  | ||||    ||    ||||        |||   | |   |  | ||| ||    ||  |  || |   || |   ||   |  ||  ||  |||| | |||  |||     || | | ||   ||     
AGGCGACGCCCAAGACGATCATGAGGGTGATGGGAGTGAAGGGCCTCACCCTCTACCACCTCAAGAGCCATCTCCAGgtaacctagctagctaaccacac--cttagctagctagggttttctcctag--cttag-------cttgttcctcgatctctttctatctatatgattctatat---tcttatgttggatgattaactaaatctgtttttggtttcctgaatatatcatgaacag----

upper sequence: GLYMA08G17400.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os06g45410.1 (Oryza sativa), 5'ss of exon 2
AGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTCCAGgtttgatta--------atacaaatccatatttctttcatgcttt-tgattttgctttatgttttagaaacacttttgcgacactgccaatgtctctcgtgttggct-tgatgtctctccttctttttgttttttc---ctttatctttatttattttttcatttgttatctgcatttag----------------
|||| ||||| || || ||||||||||||||||| || ||||| ||||| |||||||| ||||||||||| || ||||| ||  |         ||| | |||||| | | | |   | ||| |  ||   ||   |    | |  | |  |  |     ||     | ||||||    |  || | |||| | |     || ||||||||      || |   || | ||| | |  || | | || ||  | |||                
AGGCGACTCCAAAGACGATCATGAGGGTTATGGGAGTCAAGGGACTCACACTTTACCATCTCAAGAGCCATCTTCAGgtgtgtgtgcagtacatatatagatccatgtctatatatggttttctagttgcactagctagcatggttagaactagggttagcttatgctctctctctctctctctctcatgttt-tgtagattgttgtttttcagaaattcagacttctgtatctctggatctctcatgtgt-tgtagattgttgttttttcag

upper sequence: GLYMA08G17400.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G081671_T01 (Zea mays), 5'ss of exon 2
AGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTCCAGgtttg-attaatacaaatccatatttctttcatgcttttgattttgctttatgttttagaaacacttttgcgacactgccaatgtctctcgtgttggcttgatgtctctccttctttttgttttttcctttatctttatttattttttcatttgttatctgcatttag
|||| || || || |||||||||||||||||||| || ||||| |||||||| |||||||||||||| ||||| |||||  | |     |  |  |  |||      ||    ||  | ||    ||| |||| ||     ||||  |     ||    ||| ||||    || |                                                                      
AGGCAACGCCCAAGACCATCATGAGGGTTATGGGAGTCAAGGGCCTCACCCTCTACCACCTCAAGAGTCACCTTCAGgtacgtacctgcatgatccagtatg-----cagaagttgaaattaa--ttaggtttaagctgttctttctctgatttgt-gctgtgtctcactctgccag--------------------------------------------------------------------

upper sequence: GLYMA08G17400.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G052544_T01 (Zea mays), 5'ss of exon 2
AGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTCCAGgtttgattaatacaaatccatatttctttcatgcttttgattttgctttatgttttagaaacacttttgcgacactgccaatgtctctcgtgttggcttgatgtctctccttctttttgttttttcctttatctttatttattttttcatttgttatctgcatttag
|||| ||||| || |||||||||||||| ||||| || ||||| || ||||| ||||||||||||||||| || |||||  | |      |  |     | |    |  |||  |  ||      |   |  || | | || | |      ||||   ||  | |  | |       || | | |   | | |||||||  |         | ||| || ||||| |  |              
AGGCGACTCCCAAGACCATCATGAGGGTCATGGGAGTCAAGGGGCTTACCCTCTACCACCTCAAGAGCCATCTTCAGgta-gttagggttaggttttcctctgcagccagctgctacttccttcgtccttcctatacatacatatatttttctgcttctgatttttatat-------atatgtataactttgtttgtttcat---------tgattgatcttttcgtgagcag-----------

upper sequence: GLYMA08G17400.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S201_75V6.1 (Physcomitrella patens), 5'ss of exon 2
AGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTCCAGgtttgattaatacaaatccatatttctttcat--gcttttgattttgctttatgttttagaaacacttttgcgacactgccaatgtctctcgtgttggcttgatgtctctccttctttttgttttttcctttatctttatttattttttcatttgttatctgcatttag
|||| || || ||  |  | |||||||||||||| ||||||||||| || || |||||  | |||||||| ||||||||   |  || ||  |||  ||||   || ||  ||| | ||  | ||||   | |   ||| |      | |  || |     ||      ||||   ||  | |                                                               
AGGCTACACCGAAGTCTGTGATGAGGGTTATGGGAGTGAAGGGTCTTACGCTCTACCATTTGAAGAGCCATCTCCAGgtaatagcaa-actcatcagtattgtatttatctgctgtcgacgtggctt--ggctggcgaagcg-----gggggacagatttagtaaacgatgttaagtttgtattg-------------------------------------------------------------

upper sequence: GLYMA08G17400.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S33_139V6.1 (Physcomitrella patens), 5'ss of exon 4
AGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTCCAGgtttgattaatacaaatccatatttctttcatgcttttgattttgcttta--tgttttagaaacacttttgcgacactgccaatgtctctcgt-gttggcttgatgtctc--tccttctttttgttttttcctttatctttatttattttttcatttgttatctgcatttag
| || ||||| ||  || | ||| |  | ||||| ||||| || || |||||||||||| | ||||||||||||||||| || ||  |  |||||  | ||   ||  | | | |    |||||     | |||| |   |||  |||  |   || ||       | ||    ||  |  |||||   ||| |||    ||| ||    | ||   ||  ||  |     |     |||||||     
AAGCGACTCCAAAGTCCGTGATGCGTATCATGGGGGTGAAAGGGCTGACCCTTTACCACTTGAAGAGCCACCTCCAGgtgtgctt--tctaaatcactgttcggttt-ttcctctagcattgctgcgagtattttggtgccacaattg--aacttggcatctcaaatggtcaaaggtctagtgtctgggtccctctaggagttcttgtgataatggctacctaactgagagtgg---atctgcag----