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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGGAAGGCACACTCCCGGAACATTCACTAATCAGATGCAGCAATCCTACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGgttattacccctttagaagttataaccagagagtattaaaggtgttttcaggagttatattgttcaacttttaaccgtcaaggatgtttgttgagggttggtttgaaatttctgacagtaactgatcttgtttttttgtgcctgtcctgccatgatttgccttatgttattgatttttgtgcag

Basic information

species Glycine max
transcript GLYMA08G17000.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5606682|gb|AI900780.1|AI900780
EST:     ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAG                         CCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
genomic: ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGgttattaccc ... ttttgtgcagCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
EST: gi|10847312|gb|BF070017.1|BF070017
EST:     ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAG                         CCTATCAAGGA-GGTGCTCTTG
genomic: ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGgttattaccc ... ttttgtgcagCCTATCAAGGAAGGTGCTCTTG
EST: gi|37996268|gb|CF807857.1|CF807857
EST:     ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAG                         CCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
genomic: ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGgttattaccc ... ttttgtgcagCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
EST: gi|15286900|gb|BI470791.1|BI470791
EST:     TTCTGATTCTAACTGATCCAAGAACAGATCATCAG                         CCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
genomic: TTCTGATTCTAACTGATCCAAGAACAGATCATCAGgttattaccc ... ttttgtgcagCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
EST: gi|22541501|gb|BU091344.1|BU091344
EST:     ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAG                         CCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTGTGTGAC
genomic: ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGgttattaccc ... ttttgtgcagCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
EST: gi|7232750|gb|AW568103.1|AW568103
EST:     ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAG                         CCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
genomic: ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGgttattaccc ... ttttgtgcagCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
EST: gi|23052768|gb|BU577259.1|BU577259
EST:     ATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAG                         CCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
genomic: ATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGgttattaccc ... ttttgtgcagCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
EST: gi|192304648|gb|FG994940.1|FG994940
EST:     TCTTCTGATTCTAACTGATCCAAGAACAGATCATCAG                         CCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
genomic: TCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGgttattaccc ... ttttgtgcagCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
EST: gi|20075735|gb|BQ094518.1|BQ094518
EST:     ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAG                         CCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
genomic: ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGgttattaccc ... ttttgtgcagCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
EST: gi|27425246|gb|CA936766.1|CA936766
EST:     ATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAG                         CCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
genomic: ATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGgttattaccc ... ttttgtgcagCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
EST: gi|4302114|gb|AI443287.1|AI443287
EST:     ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAG                         CCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
genomic: ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGgttattaccc ... ttttgtgcagCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
EST: gi|22540297|gb|BU090140.1|BU090140
EST:     ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAG                         CCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
genomic: ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGgttattaccc ... ttttgtgcagCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
EST: gi|151405528|gb|EV275342.1|EV275342
EST:     ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAG                         CCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
genomic: ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGgttattaccc ... ttttgtgcagCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
EST: gi|22540179|gb|BU090022.1|BU090022
EST:     ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAG                         CCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
genomic: ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGgttattaccc ... ttttgtgcagCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
EST: gi|192304647|gb|FG994939.1|FG994939
EST:     ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAG                         CCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC
genomic: ACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGgttattaccc ... ttttgtgcagCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCAGGAAGGCACACTCCCGGAACATTCACTAATCAGATGCAGCAATCCTACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGgttattacccctttagaagttataaccagagagtattaaaggtgttttcaggagttatattgttcaacttttaaccgtcaaggatgtttgttgagggttggtttgaaatttctgacagtaactgatcttgtttttttgtgcctgtcctgccatgatttgccttatgttattgatttttgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA