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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTTATTATGGCATGGGACACATGCTCAATGACATAACTGCTGCTTGTTGGTTCACATATTTATTATTGTTCTTGACAGATATTGGACTTTCACCAAGgtgcattttatgaattctttttcgctcatcaactagtttagctaagttttgtattataatagcttgttgattgatgtaactgaaagatcaaaatttgaaa...

Basic information

species Glycine max
transcript GLYMA08G16870.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16870.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G44280.1 (Arabidopsis thaliana), 5'ss of exon 1
TCTTTTATTATGGCATGGGACACATGCTCAATGACATAACTGCTGCTTGTTGGTTCACATATTTATTATTGTTCTTGACAGATATTGGACTTTCACCAAGgtgcattttatgaattctttttcgctcatcaactagtttagctaagttttgtattataatagcttgttgattgatgtaactga--aagatcaaaatttgaaa
| || ||||||||  | ||||| ||||| |||||||| |||||| ||||||||||||| ||  |  | ||||| || ||  | ||||| || || |||||||          || ||||     ||| |||  |  | ||   ||||| |  | | |  ||   ||| ||||  ||  | | |   ||||      |  |  
TGTTCTATTATGGAGTTGGACATATGCTTAATGACATTACTGCTTCTTGTTGGTTCACTTACCTTCTCTTGTTTTTAACCCAAATTGGCCTCTCCCCAAGgta---------aaatctt-----ctcctcagtttttgtaaa-aagttcttcacttt--taatctgtggattagtgagattaatcgagatttgttctcaag-

upper sequence: GLYMA08G16870.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 3
TCTTTTATTATGGCATGGGACACATGCTCAATGACATAACTGCTGCTTGTTGGTTCACATATTTATTATTGTTCTTGACAGATATTGGACTTTCACCAAGgtgcattttatgaattctttttcgctcatcaactagtttagctaagttttgtattataatagcttgttgattgatgtaactgaaagatcaaaatttgaaa---
|||||||||||||  | ||||| ||||||||||| || ||  ||||||||||||| || ||| | ||| |||| ||||||||||| || ||  |  ||||||  ||||  |      |  |  |    | | ||  ||    ||  ||   |  | || |    | || |   || ||         ||  |    |||    
TCTTTTATTATGGAGTAGGACATATGCTCAATGATATCACATCTGCTTGTTGGTTTACTTATCTCTTAGTGTTTTTGACAGATATCGGCCTCCCTTCAAGgtatatttcttactacatgctcagaattttatctgattacaatacattc-atgatgtatttttcttttaa--aatttagtactcttttctgagagagaagtac